PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC656_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 411aa MW: 45759.5 Da PI: 5.9144

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC656_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	248	285	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq RrC656_p2 248 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 285 67799************55......5555567777777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.28	235	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-5	248	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-5	248	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MDVEESSFLT QYPNLYPYLK NHALNNTSSV ETERLITDQS YPGLDSTFHT LSTDKEEAER 60 VPERRCESSR LDALISSGYN FPGSELLEAL GSGFKQTSRG LEELVKSEHS SATIRPTDDN 120 MSHSQLTFDS APENLLDAVV ASVVCHSDGN ARDDIFSSRS VESFLTSMEP SGHNNHIVDR 180 AMNQLPLAEV DTQQNPSDIC GAFSSIGFSS TCPSSSSDHF QTSLEMMPKK NKKRAKPGES 240 SRPRPRDRQL IQDRIKELRE LVPNGSKCSI DSLLERTIKH MLFLQNVTKH ADKLSKSANS 300 KMQQKETGAQ GSTCAVEVGG HLQVCSIIVE NLNKHGMVLI EMLCEECSHF LEISNVIKSL 360 DLTILRGITE AQGDKTWICF VVESQSNKVM QRMDILWSLV QIFQPKANGK R

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MDVEESSFLT QYPNLYPYLK NHALNNTSSV ETERLITDQS YPGLDSTFHT LSTDKEEAER  60
VPERRCESSR LDALISSGYN FPGSELLEAL GSGFKQTSRG LEELVKSEHS SATIRPTDDN  120
MSHSQLTFDS APENLLDAVV ASVVCHSDGN ARDDIFSSRS VESFLTSMEP SGHNNHIVDR  180
AMNQLPLAEV DTQQNPSDIC GAFSSIGFSS TCPSSSSDHF QTSLEMMPKK NKKRAKPGES  240
SRPRPRDRQL IQDRIKELRE LVPNGSKCSI DSLLERTIKH MLFLQNVTKH ADKLSKSANS  300
KMQQKETGAQ GSTCAVEVGG HLQVCSIIVE NLNKHGMVLI EMLCEECSHF LEISNVIKSL  360
DLTILRGITE AQGDKTWICF VVESQSNKVM QRMDILWSLV QIFQPKANGK R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018439028.1	0.0	PREDICTED: transcription factor bHLH155-like
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A397Z937	0.0	A0A397Z937_BRACM; Uncharacterized protein
TrEMBL	M4DP33	0.0	M4DP33_BRARP; Uncharacterized protein
STRING	Bra018273.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424]