PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 287aa MW: 33221.6 Da PI: 8.0678

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6527_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.7	1.1e-16	11	53	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 ri n+ r +t+ kR++ + KKA E S+LC+++ ++i++++t RrC6527_p1 11 RIANDKTRMTTYKKRKACLYKKAGEFSTLCGVQTCLIVYGPTK 53 89**************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-11	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-7	4	24	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.58E-23	5	83	No hit	No description
PROSITE profile	PS50066	14.143	7	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.29E-18	7	89	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-16	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-7	24	39	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.7E-7	39	60	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDHDKVVDLQ RIANDKTRMT TYKKRKACLY KKAGEFSTLC GVQTCLIVYG PTKATDEVIS 60 KPEIWPEDET KARDIIRRYR DTAPNSCRKE AHVETFVNDI GKAKETENHN NTRGIHNKNK 120 YCCWEEKLDK CSQEQLRGIF DDVGNKLHEA VMRQNRNAIR AHNQAMESHY MSQYYAGHQQ 180 QQSLMFPYNN MSFPLFSSPH DDQIPMEPIL VDNFADSVVN QGFMMSKGNE GTQFMQRQAP 240 YHNLEAVVQR SASFNVNPFL GYQVPYNIPR LPGNQAEIWD FMAKKPI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018453520.1	0.0	PREDICTED: agamous-like MADS-box protein AGL82
Swissprot	Q9FIM0	1e-123	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	A0A397XKA3	1e-173	A0A397XKA3_BRACM; Uncharacterized protein
TrEMBL	A0A3P6E8N1	1e-173	A0A3P6E8N1_BRAOL; Uncharacterized protein
STRING	Bra002611.1-P	1e-173	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	1e-125	AGAMOUS-like 82

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]