PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC645_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 249aa    MW: 28864.2 Da    PI: 10.2605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC645_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-151964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed+ l ++v+++G+++W+ Ia+++  gR++k+c++rw++ 
        RrC645_p7 19 RGHWRPIEDDHLRQLVEEYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 64
                     899****************************9.************96 PP
2Myb_DNA-binding58.51.5e-1871114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l++a++ +G++ W++Iar ++ gRt++ +k++++ 
        RrC645_p7  71 KKPFTEEEEERLLQAHRFHGNR-WASIARLFP-GRTDNAVKNHFHV 114
                      689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3161465IPR017930Myb domain
SMARTSM007175.8E-131867IPR001005SANT/Myb domain
SuperFamilySSF466894.12E-2918112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-252072IPR009057Homeodomain-like
CDDcd001674.01E-122263No hitNo description
PfamPF139212.4E-162282No hitNo description
PROSITE profilePS5129423.95366120IPR017930Myb domain
SMARTSM007171.9E-1570118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2173118IPR009057Homeodomain-like
CDDcd001676.28E-1273113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEMSRGSSSF DNKKISCQRG HWRPIEDDHL RQLVEEYGPK NWNFIAQHLY GRSGKSCRLR  60
WYNQLDPNIT KKPFTEEEEE RLLQAHRFHG NRWASIARLF PGRTDNAVKN HFHVIMARRK  120
RENSSSTATS TLNQSWHNIL SHSSSLTRLD RFQFGLCTYQ NDKNRGLWPY TFVPARKDDQ  180
FGSSSISNKD IYTERRKSKV LVDHHNYALH AGKPDHKRNS SNEDGPSMGD NGGKKNVTFI  240
DFLGVGLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-34191194104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-331911958158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-331911958158MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-34191194104C-Myb DNA-Binding Domain
1msf_C4e-34191194104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448445.11e-172PREDICTED: transcriptional activator Myb-like
TrEMBLA0A078GT241e-158A0A078GT24_BRANA; BnaC03g66570D protein
TrEMBLA0A3P6BMS71e-158A0A3P6BMS7_BRAOL; Uncharacterized protein
STRINGBra034565.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.11e-148myb domain protein 69