 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
RrC645_p7 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
MYB |
| Protein Properties |
Length: 249aa MW: 28864.2 Da PI: 10.2605 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC645_p7 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.2 | 2.4e-15 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed+ l ++v+++G+++W+ Ia+++ gR++k+c++rw++
RrC645_p7 19 RGHWRPIEDDHLRQLVEEYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 64
899****************************9.************96 PP
|
| 2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
++++T+eE+e+l++a++ +G++ W++Iar ++ gRt++ +k++++
RrC645_p7 71 KKPFTEEEEERLLQAHRFHGNR-WASIARLFP-GRTDNAVKNHFHV 114
689*******************.*********.**********986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MEMSRGSSSF DNKKISCQRG HWRPIEDDHL RQLVEEYGPK NWNFIAQHLY GRSGKSCRLR 60
WYNQLDPNIT KKPFTEEEEE RLLQAHRFHG NRWASIARLF PGRTDNAVKN HFHVIMARRK 120
RENSSSTATS TLNQSWHNIL SHSSSLTRLD RFQFGLCTYQ NDKNRGLWPY TFVPARKDDQ 180
FGSSSISNKD IYTERRKSKV LVDHHNYALH AGKPDHKRNS SNEDGPSMGD NGGKKNVTFI 240
DFLGVGLVS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 4e-34 | 19 | 119 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-33 | 19 | 119 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-33 | 19 | 119 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 4e-34 | 19 | 119 | 4 | 104 | C-Myb DNA-Binding Domain |
| 1msf_C | 4e-34 | 19 | 119 | 4 | 104 | C-Myb DNA-Binding Domain |
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