 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC6452_p4 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
HSF |
| Protein Properties |
Length: 462aa MW: 51278.1 Da PI: 4.9128 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC6452_p4 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 110.8 | 9.7e-35 | 20 | 112 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d+ ++e++sws+ ++sfvv++ efa+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i
RrC6452_p4 20 FLSKTYDMVDDPLTDEVVSWSSGNKSFVVWNVPEFARLFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLKSIV 107
9****************************************************************999.........******************** PP
XXXXX CS
HSF_DNA-bind 99 rkkse 103
r+k +
RrC6452_p4 108 RRKPS 112
*9976 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 462 aa
Download sequence Send
to blast |
MGSNCESVVA TTVVSSIPPF LSKTYDMVDD PLTDEVVSWS SGNKSFVVWN VPEFARLFLP 60
KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK QLLKSIVRRK PSQVQPPQQP 120
QVQHSSVGAC VEVGRFGLEG EVERLQRDKN VLTQELVRLR QQQQVTEHHL QNVGQKVHVM 180
EQRQQQMMSF LAKAVQSPGF LNQFSQQTNE ENQHISESNK KRRLPAEEDH KYSGSYGANG 240
LSRQIVRYQS SMNEAADTML EQIHNMRNPH SSQEPLSSNH DGSFLLSDVP NISDNGSSTN 300
GASGVTLADV SSNPAMTYHV PCEANQILEG NLPYSQVDLL APNQGGAAAA YGSSSSDVVG 360
CETDTGECLD PIMAVLAGSM ALESNAVNEL LPGVQDPLWE QFFGERPVIG DTEELVSGSV 420
DNGLLMEQLE LQSNLRNVLS NNQQMNHLTE QMGFLSSDAL RK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 5e-25 | 15 | 109 | 15 | 120 | Heat shock factor protein 1 |
| 5d5u_B | 6e-25 | 15 | 109 | 24 | 129 | Heat shock factor protein 1 |
| 5d5v_B | 6e-25 | 15 | 109 | 24 | 129 | Heat shock factor protein 1 |
| 5d5v_D | 6e-25 | 15 | 109 | 24 | 129 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
