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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC644_p8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | CPP | ||||||||
Protein Properties | Length: 511aa MW: 56392.1 Da PI: 8.1029 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.2 | 5.3e-16 | 229 | 267 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+C+CkkskClk+YCeCfaag++C e C+C dC+Nk RrC644_p8 229 SCKRCHCKKSKCLKLYCECFAAGVYCIEPCTCLDCFNKP 267 689**********************************96 PP | |||||||
2 | TCR | 52.1 | 1.3e-16 | 315 | 353 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnC+ks+ClkkYCeC+++g+ Cs +C+Ce+CkN RrC644_p8 315 RHKRGCNCRKSNCLKKYCECYQSGVGCSINCRCEGCKNA 353 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.3E-19 | 228 | 269 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.584 | 229 | 355 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.1E-11 | 231 | 266 | IPR005172 | CRC domain |
SMART | SM01114 | 5.0E-17 | 315 | 356 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 6.5E-12 | 317 | 353 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MDLVPKGHYS TQSYPPPPLF LIWNMFSFCS HIYSSDPSKE VVLVEETLLE TVQILKNDCF 60 STPTPTPPRA INDGLTDLQR MCDGNVKRKS DTPDWETLFP DTPELLINDT LNDSEVDRCF 120 LPVSSDSKRR SCGGKKPVSN SKESSADGLH RGVRRRLLDF EMPNIKQTSK DSDVGNEYSL 180 SGNIKAGEAA GQSVVEEVPK SSLDLVVMNQ SSPKKKRLKS EQGGEGDSSC KRCHCKKSKC 240 LKLYCECFAA GVYCIEPCTC LDCFNKPIHE ETVLATRKQI ESRNPLAFAP KVIGNADSSI 300 MEVGDDASNT PASARHKRGC NCRKSNCLKK YCECYQSGVG CSINCRCEGC KNAFGRKAAS 360 SFVGLDIKQD DVSETAKTQH RAELFSSVPL PTSTPLSLRQ PLAQLPISFN NMLLPQQSQQ 420 LHGASGSSLY EGQSFRKQGM SLFSHSRIET IAEDIENVIL SPITNINAVS PNSKRVSLPH 480 LDASQMTPRR RNGERKLLLS IPTFPSLTPH R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-15 | 231 | 352 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-15 | 231 | 352 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489622.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 3 | ||||
Swissprot | Q8L548 | 1e-170 | TCX3_ARATH; Protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A0D3BCT6 | 0.0 | A0A0D3BCT6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g081380.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1467 | 28 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 1e-145 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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