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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6417_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 321aa MW: 35945.1 Da PI: 6.5009 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.6e-08 | 122 | 142 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck+Gd C F+Hg RrC6417_p1 122 ACPEFRK-GGCKRGDACEFSHG 142 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.362 | 69 | 106 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-5 | 117 | 143 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.521 | 118 | 144 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 121 | 144 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-6 | 122 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-4 | 149 | 180 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.568 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.53 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MMIGETHRAY PTVQIPPWPL NDDLTAVDIY GSPDGGNSMI EALAALQRYL PSNEPDPDSD 60 PELSGPDSAI DTYSCDHFRM YEFKVRRCTR GRSHDWTECP YAHPGEKARR RDPRKYHYSG 120 TACPEFRKGG CKRGDACEFS HGVFECWLHP ARYRTQPCKD GGNCRRRVCF FAHSPDQLRV 180 LPNQSPDRVD SFDGVSPIRR ACQFSFSPSS GSPPLNKVKS LPSSSGNQFR CFGFGSPRGS 240 VLGPGFRSLP NTPTRPEIGY VDIWDNGLEE EPAMERVESG RELRAKMFEK LSKENCMDRV 300 DPDPSQGSGE APDVGWVSEL V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353143 | 0.0 | AK353143.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-D05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018433036.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 20 | ||||
Swissprot | O82199 | 0.0 | C3H20_ARATH; Zinc finger CCCH domain-containing protein 20 | ||||
TrEMBL | A0A0D3D2I3 | 0.0 | A0A0D3D2I3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EV56 | 0.0 | A0A3P6EV56_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g005390.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-170 | C3H family protein |
Publications ? help Back to Top | |||
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