PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6353_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 362aa    MW: 39530.9 Da    PI: 6.5122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6353_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31966260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
                dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y  +Hnh+k
  RrC6353_p2  9 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKVERSR-EGHITEIIYAKTHNHPK 66
                8****************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.422367IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-28567IPR003657WRKY domain
SuperFamilySSF1182901.44E-25667IPR003657WRKY domain
SMARTSM007744.0E-33866IPR003657WRKY domain
PfamPF031062.3E-24965IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-9176204IPR003657WRKY domain
SuperFamilySSF1182902.09E-9183226IPR003657WRKY domain
PROSITE profilePS5081110.958186226IPR003657WRKY domain
SMARTSM007743.6E-6191225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MASSGAPADD GYNWRKYGQK LVKGSEYPRS YYKCTHPNCE VKKKVERSRE GHITEIIYAK  60
THNHPKPSPN RRSGIGSSGT CNDMQIDGTE QQESFAGTDE NVEWTSPVQS GTQFGYGEAS  120
FFKVEAEEGG TSHMSVSMGG DGEADESEPK RRLDVMTCNA ISRIRKLEAC ASRTTREPKV  180
VVQTTSDIDI LEDGYRWRKY GQKVRASDDL TSVLTTYIGK HTHEVPAARN SSHLSPGSSG  240
TIPGGLATQT QNHHVHYPVP HSSPEGMVTA NSSLFDFQTP MRPPWAGFSV YGGETELLGL  300
SISGLAIGQE RFTGLPTPAI GDTAELMSQL PAEPKVEPVS QKELGLSRSS LIYSDMSRLP  360
QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-159681878Probable WRKY transcription factor 4
2lex_A1e-159681878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470912.10.0PREDICTED: probable WRKY transcription factor 34
SwissprotO655901e-158WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A3N6QWZ40.0A0A3N6QWZ4_BRACR; Uncharacterized protein
TrEMBLM4ECC90.0M4ECC9_BRARP; Uncharacterized protein
STRINGBra026438.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.11e-144WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]