PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6345_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 414aa    MW: 47185.4 Da    PI: 6.2669
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6345_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.28.3e-27101195185
    trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                 +Wt+++v++Li+a+++++++++ +          +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++
  RrC6345_p2 101 KWTDKMVKLLITAVSYIGDDSSMDGgsrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDSI 195
                 7**************8888887543345556677**********************************************669999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2499222No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDVNFPQGGG VVRGGPSSYG GGFDLQSSMN QHRHNLQEGL PFTMVTAQTC DHHHTMAMAE  60
QQHKPGEREK NSASDDDEPS FNEEGGGGEK SNKGSPWQRV KWTDKMVKLL ITAVSYIGDD  120
SSMDGGSRRK FAALQKKGKW KSVSKVMSER GYHVSPQQCE DKFNDLNKRY KKLNDMLGRG  180
TSCQVVENPA LLDSIGYLND KEKDDVRKIM SSKHLFYEEM CSYHNGNRLH LPHDLALQRS  240
LKLALRNRDD HESHHQVEDL DEEDGEGEEG DEYDDFSHGG CRGVHHGGGG GALKKARQSH  300
SHEDVDHPGQ NVSSLESNKL SLAQMPFPQG GEESERAALT QKQWIESRTL QLEEQKLQIQ  360
VELLELEKQR FRWERFSKKR DQELERMRME NERMKLENDR MGLELKQREL GVEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458501e-152AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913781e-152AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026841e-152CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F41e-152AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149597.10.0PREDICTED: uncharacterized protein LOC103872912
TrEMBLA0A397YZY60.0A0A397YZY6_BRACM; Uncharacterized protein
TrEMBLM4EAS20.0M4EAS2_BRARP; Uncharacterized protein
STRINGBra025881.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors