PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 363aa MW: 41117.3 Da PI: 8.5893

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6340_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.5	6.5e-22	27	72	6	51
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +s r ++++kR+ +++KKA+ELS+LC++ev+vi+++s g+l+++++ RrC6340_p3 27 SSFRATSLAKRQVTVFKKAQELSILCGIEVCVIYYGSGGELKTWPK 72 67799***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-5	13	73	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-17	26	105	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-13	30	70	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.07E-16	30	94	No hit	No description
PROSITE profile	PS50066	12.306	30	74	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MSSSSSLSCL PSSSSSRIRQ TLVQKTSSFR ATSLAKRQVT VFKKAQELSI LCGIEVCVIY 60 YGSGGELKTW PKDREKVKDM ARRYIQLSDV KRRKGQDDLD QFLKKIDKDD SKNDKKKKKL 120 KLGSSCKYPD WDPRFDNCSV EQLTELIQSL ECTQTKLQHR LRGVVESQRQ RNVHYTNMAP 180 TTTSGMNHLQ QQSNQVDMDM YNHGIGTLPQ LPSTSAFSQA QSLAPLPNSL AIHQNPNMGS 240 YSRLLGVEES GLDELMGMNM LPYNSINTNC ANYFPNLFQQ NCYNMEDYSG VLGAQETCIN 300 NMNGEDYSGL LWTQGTGINM DMFGYNNNNN PNGFPQQFVQ YPTQRVPPGF QYMDRSTQSV 360 RPF

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MSSSSSLSCL PSSSSSRIRQ TLVQKTSSFR ATSLAKRQVT VFKKAQELSI LCGIEVCVIY  60
YGSGGELKTW PKDREKVKDM ARRYIQLSDV KRRKGQDDLD QFLKKIDKDD SKNDKKKKKL  120
KLGSSCKYPD WDPRFDNCSV EQLTELIQSL ECTQTKLQHR LRGVVESQRQ RNVHYTNMAP  180
TTTSGMNHLQ QQSNQVDMDM YNHGIGTLPQ LPSTSAFSQA QSLAPLPNSL AIHQNPNMGS  240
YSRLLGVEES GLDELMGMNM LPYNSINTNC ANYFPNLFQQ NCYNMEDYSG VLGAQETCIN  300
NMNGEDYSGL LWTQGTGINM DMFGYNNNNN PNGFPQQFVQ YPTQRVPPGF QYMDRSTQSV  360
RPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	121	KKKKKLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487580.1	0.0	PREDICTED: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	1e-95	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	A0A3P5Z8I5	0.0	A0A3P5Z8I5_BRACM; Uncharacterized protein
STRING	Bra022341.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-90	AGAMOUS-like 103

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]