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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC629_p7 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
C2H2 |
| Protein Properties |
Length: 384aa MW: 43899 Da PI: 6.9684 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC629_p7 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.2 | 2.9e-05 | 124 | 148 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
y+C C+k F ++s LkrH H
RrC629_p7 124 YVCDypGCDKKFLDSSKLKRHWLIH 148
89*******************9988 PP
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| 2 | zf-C2H2 | 20.3 | 1.5e-06 | 154 | 178 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++C+ Cgk Fs nL++H++tH
RrC629_p7 154 FVCTyqGCGKAFSLDFNLRSHMKTH 178
89**********************9 PP
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| 3 | zf-C2H2 | 13.5 | 0.00022 | 184 | 209 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
+ Cp Cgk++ + + Lk+H H
RrC629_p7 184 HICPysGCGKRYAHEYKLKNHVAAyH 209
68*******************87666 PP
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| 4 | zf-C2H2 | 14.6 | 9.4e-05 | 248 | 273 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
y Cp C+k + + + Lk H+++ H
RrC629_p7 248 YACPyeGCDKAYIHEYKLKLHLKReH 273
89*********************999 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 4.6E-13 | 90 | 121 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.013 | 95 | 119 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.325 | 95 | 124 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 97 | 119 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.03E-8 | 98 | 148 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 1.8E-14 | 122 | 144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0025 | 124 | 148 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 12.404 | 124 | 153 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 126 | 148 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.28E-13 | 135 | 189 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 1.5E-18 | 145 | 180 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 8.1E-4 | 154 | 178 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.884 | 154 | 183 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 156 | 178 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.3E-6 | 184 | 205 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0074 | 184 | 209 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 186 | 209 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 4.7E-9 | 245 | 270 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 2.52E-5 | 245 | 271 | No hit | No description |
| SMART | SM00355 | 0.0051 | 248 | 273 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.806 | 248 | 278 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 250 | 273 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MEQHLQYPYQ NPFERQPILK SSKAPPAVRW IKDWVPQDIV ASGAKCYLRK WITVSLICFV 60
GGTEETLNRL KEKVKEPTTA DVSDPDPEPT SEILFLCSYD GCGKIFFDVN ALRKHSHVHG 120
ERQYVCDYPG CDKKFLDSSK LKRHWLIHTG ARDFVCTYQG CGKAFSLDFN LRSHMKTHSQ 180
ANYHICPYSG CGKRYAHEYK LKNHVAAYHE KNAAGETPTY TPPAEKVSRT PKTPAATVYA 240
SASLERPYAC PYEGCDKAYI HEYKLKLHLK REHLPEEKNN TPNLEEGSDQ DVYRKHASQK 300
HKQQSRAKAK MKTLPSAKAV KKGSTSSPAK ARMAKKPWQA NETFEEEEED SEETEEDREN 360
VADGWRFGGN NVEEDDDEET EDED
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| Functional Description ? help
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| Source |
Description |
| UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC241188 | 1e-116 | AC241188.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH120G08, complete sequence. |
| Publications
? help Back to Top |
- Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
DNA Res., 2001. 8(6): p. 285-90
[PMID:11853315] - Li T,Wu XY,Li H,Song JH,Liu JY
A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
Mol Plant, 2016. 9(5): p. 650-661
[PMID:26961720] - Wu XY,Li T
A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
Front Plant Sci, 2017. 8: p. 323
[PMID:28348572]
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