|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
RrC6274_p1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
Family |
bZIP |
Protein Properties |
Length: 416aa MW: 46959.6 Da PI: 6.642 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC6274_p1 | genome | MSU | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 31.4 | 4.1e-10 | 131 | 172 | 3 | 44 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
++k rr+++NReAAr+sR+RKka +++Lee +L++ ++
RrC6274_p1 131 DDKTKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 172
6899**************************987777766554 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 416 aa
Download sequence Send
to blast |
VLTKVSSSSS ICSLENAFQT GDSLFISRLR DELSMMMSSS SSTNTQAVPF RDMGMYEPFQ 60 QLSGWENTFN TITSNNNNNN NNQTSSTVHE VDAARTEADV NNKGNYTSLY NNNSTEAEPS 120 SNNDQDEVQI DDKTKRRLAQ NREAARKSRL RKKAHVQQLE ESRLKLSQLE QELVRARQQG 180 LCVRNPSDAT TYLGPAGTMN TGIAAFEMEY KHWLEEQRKR VGEIRTALGA HISDVELKML 240 VDVCLNHYAN LFRMKADAAK ADVFFLISGM WRTSTERFFQ WIGGFRPSEL LNVVMPYVEP 300 LTDQQLLEVR NLQQSSQQAE EALSQGLDKL QQGLVENVAV VESVNQGAQM ASAMENLQSL 360 EGFVNQADHL RKQSMQQMSK ILTTRQAARG LLALGEYFHR LRALSSLWAA RPRERS
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | EU953106 | 0.0 | EU953106.1 Zea mays clone 1383078 transcription factor TGA4 mRNA, complete cds. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7. PLoS ONE, 2013. 8(12): p. e82032 [PMID:24324742] - Herrera-Vásquez A, et al.
Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] - Fang H, et al.
The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis. Plant J., 2017. 91(6): p. 1038-1050 [PMID:28670772] - Sarkar S, et al.
Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta. Planta, 2018. 247(1): p. 181-199 [PMID:28913593]
|