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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC625_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 224aa MW: 26131.8 Da PI: 8.2031 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75 | 6e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++nrq+t+skR++g++KKA+ELS+LCd++ a+++fs++++l +ss RrC625_p4 9 KPIQNSTNRQITYSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLFSS 59 68*******************************************988875 PP | |||||||
2 | K-box | 18.6 | 7.9e-08 | 115 | 184 | 7 | 76 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 k++ ++ e+l++e+ +Lk++++ ++e+R++ + + s++e++ e++L + l+++ +++++ll ++ RrC625_p4 115 KRQGIKNKEELEKEVCRLKQQLHISEEELRKFEPDPVRFTSMEEMEACETHLLSTLTRVVQRREHLLSRS 184 456678899*********************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.086 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.9E-30 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-24 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-22 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.8E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGRAKLEIKP IQNSTNRQIT YSKRKKGLIK KAYELSTLCD IDLALLMFSP SDRLCLFSSQ 60 TRYILLISSS RTFHAFQEYF RSSFSAWKIE DVLEKYINLP DQERDNAIVF PDQSKRQGIK 120 NKEELEKEVC RLKQQLHISE EELRKFEPDP VRFTSMEEME ACETHLLSTL TRVVQRREHL 180 LSRSCGAPST QQSMENIEGW EPEAESKQAR IIANSAYASN QLRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_B | 4e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_C | 4e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6byy_D | 4e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_A | 4e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_B | 4e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_C | 4e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
6bz1_D | 4e-15 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189414 | 1e-111 | AC189414.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061K11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455529.1 | 1e-128 | PREDICTED: agamous-like MADS-box protein AGL66 | ||||
Swissprot | Q9LM46 | 4e-71 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A0D3D1G6 | 1e-114 | A0A0D3D1G6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GWU6 | 1e-114 | A0A3P6GWU6_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g121610.1 | 1e-115 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77950.2 | 1e-102 | AGAMOUS-like 67 |
Publications ? help Back to Top | |||
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