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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC6210_p3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 229aa MW: 24195.5 Da PI: 6.2926 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC6210_p3 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 221.5 | 1.8e-68 | 1 | 157 | 6 | 154 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel.....kskkqsalsstkls 92
++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qla + +k++++a + +r+ ++ sal++ +++
RrC6210_p3 1 MNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLAGLPTKRSRDAssgcgddD---DDREGDEnggqgGGGGGSALACIRVV 96
68**************************************************999998888766765431...22222223444456778999****99 PP
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+a+s+ +e s+lP+evs +avfrc+rvss++d++ee+aYqtavsigGhvfkGiLydqG+++
RrC6210_p3 97 NASSS-GFESSHLPPEVSLPAVFRCMRVSSIEDEDEEYAYQTAVSIGGHVFKGILYDQGPSD 157
99765.99***************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MNCQDCGNQA KKDCPHMRCR TCCKSRGFDC QTHVKSTWVP AAKRRERQAQ LAGLPTKRSR 60 DASSGCGDDD DDREGDENGG QGGGGGGSAL ACIRVVNASS SGFESSHLPP EVSLPAVFRC 120 MRVSSIEDED EEYAYQTAVS IGGHVFKGIL YDQGPSDDHR YSSSPAAAAV ETSQHHLNLL 180 ASASSVATTT AVTASNINNA SIDHSSVYTA APINSFITPA TSFFASPRS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU205268 | 0.0 | GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds. |