 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
RrC6204_p2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NF-YC |
| Protein Properties |
Length: 281aa MW: 31159.5 Da PI: 4.6302 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC6204_p2 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 44.6 | 3.2e-14 | 6 | 79 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
++++P arikki++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ + ++fdfl ++v
RrC6204_p2 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLY------NVFDFLREVVS 79
5789***********************************************999998765554......56777777765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKSLE LFLQDLCDRT YEITLERGAK 60
TVSSLHLYNV FDFLREVVSK VPDYGHAQGQ GQGPADVTMD DRTISKRRKP VGDEVNDSDE 120
EYKKSKTQEM GNAKPSGRGG RGRGRGKGRG GRAARAAERE NLNREIELES FMVEEKPPQD 180
STQVHESVSA PHEIEKKEGI AAASNEDTTQ QQLQSPKEGN DFDLNAESLD LNETKPAPVA 240
AATASEEYTC WSMELGQIDP AQFASLGKRI DEEEDYDEEE G
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 140 | 149 | RGRGRGKGRG |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353067 | 1e-156 | AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23. |
