PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC618_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 258aa MW: 28932.6 Da PI: 5.9461

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC618_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F ++ L H +H RrC618_p4 84 FQCKACKKVFASHQALGGHRASH 106 89**************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.81E-5	83	106	No hit	No description
Pfam	PF13912	2.3E-9	83	108	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.014	84	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.098	84	106	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:1.10.601.10	4.7E-4	117	149	No hit	No description
SuperFamily	SSF57667	1.81E-5	158	185	No hit	No description
Pfam	PF13912	1.0E-12	162	186	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.65	163	185	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	163	185	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	165	185	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MQNSSCIDLI MFSSQGQHDE GNMSRPPWKR DRSNHHLNLY PNEDEELANC LVLLSNSGNA 60 YNNNNRHGHG KSKTVKKQKT AHVFQCKACK KVFASHQALG GHRASHKKVK GCFASQDKEE 120 EEEEEEYKED DDEEEEEDDE EEEEEDKPTA AAHIIARKRS NAHECTVCHR VFSSGQALGG 180 HKRCHWLTPS TYLRMTPLHD SSAVRSQALD QPSLDLNLAC QEYSVDPTVM SVGRDGGGNN 240 HNATSSNSWL KLASGDWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	32	PPWKRDRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013601041.1	1e-161	PREDICTED: zinc finger protein ZAT2-like
TrEMBL	A0A0D3DZH4	1e-159	A0A0D3DZH4_BRAOL; Uncharacterized protein
STRING	Bo8g118200.1	1e-160	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13895	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	9e-24	C2H2-like zinc finger protein