PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 195aa MW: 22714 Da PI: 10.7475

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6154_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	5.7e-14	58	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +lv++v+ +G+ +W+ Ia++ gRt+k+c++rw++ RrC6154_p2 58 RGHWKISEDSQLVELVAVYGPQNWNHIAKMQ--GRTGKSCRLRWFNQ 102 799***********************866..5********996 PP
2	Myb_DNA-binding	46.9	6.6e-15	110	153	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ eE+e+l+ a++ +G++ W+ Ia+ + gRt++ +k++w+ + RrC6154_p2 110 RAFSVEEEERLLAAHRAFGNK-WAMIAKIFD-GRTDNTLKNHWHVL 153 689****************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.682	53	103	IPR017930	Myb domain
SMART	SM00717	2.2E-10	57	105	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-13	58	102	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-26	58	150	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-21	59	110	IPR009057	Homeodomain-like
CDD	cd00167	9.49E-10	61	101	No hit	No description
PROSITE profile	PS51294	24.357	104	158	IPR017930	Myb domain
SMART	SM00717	1.1E-11	108	156	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-11	110	153	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-19	111	158	IPR009057	Homeodomain-like
CDD	cd00167	3.41E-8	111	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDISCFQKYP FDLPCSRAFN GDGEYNAVEF SNKRRMVKVS DESKNKKKKQ RGSRVCSRGH 60 WKISEDSQLV ELVAVYGPQN WNHIAKMQGR TGKSCRLRWF NQLDPRINKR AFSVEEEERL 120 LAAHRAFGNK WAMIAKIFDG RTDNTLKNHW HVLMARKLRQ QSTSYMRRFN GSAHKPNADH 180 KSFNHSPGLC LLTLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-29	58	158	4	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	48	KRRMVKVSDESKNKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452450.1	1e-138	PREDICTED: trichome differentiation protein GL1-like
Swissprot	Q9SEZ4	9e-61	MY105_ARATH; Transcription factor MYB105
TrEMBL	M4FD66	1e-124	M4FD66_BRARP; Uncharacterized protein
STRING	Bra039036.1-P	1e-124	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6300	18	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29020.1	1e-100	myb domain protein 110

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]