PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6154_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 195aa    MW: 22714 Da    PI: 10.7475
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6154_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.7e-1458102147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W   Ed +lv++v+ +G+ +W+ Ia++   gRt+k+c++rw++ 
       RrC6154_p2  58 RGHWKISEDSQLVELVAVYGPQNWNHIAKMQ--GRTGKSCRLRWFNQ 102
                      799*************************866..5**********996 PP
2Myb_DNA-binding46.96.6e-15110153247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +++ eE+e+l+ a++ +G++ W+ Ia+ +  gRt++ +k++w+ +
       RrC6154_p2 110 RAFSVEEEERLLAAHRAFGNK-WAMIAKIFD-GRTDNTLKNHWHVL 153
                      689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.68253103IPR017930Myb domain
SMARTSM007172.2E-1057105IPR001005SANT/Myb domain
PfamPF002495.2E-1358102IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-2658150IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2159110IPR009057Homeodomain-like
CDDcd001679.49E-1061101No hitNo description
PROSITE profilePS5129424.357104158IPR017930Myb domain
SMARTSM007171.1E-11108156IPR001005SANT/Myb domain
PfamPF002493.1E-11110153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-19111158IPR009057Homeodomain-like
CDDcd001673.41E-8111154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDISCFQKYP FDLPCSRAFN GDGEYNAVEF SNKRRMVKVS DESKNKKKKQ RGSRVCSRGH  60
WKISEDSQLV ELVAVYGPQN WNHIAKMQGR TGKSCRLRWF NQLDPRINKR AFSVEEEERL  120
LAAHRAFGNK WAMIAKIFDG RTDNTLKNHW HVLMARKLRQ QSTSYMRRFN GSAHKPNADH  180
KSFNHSPGLC LLTLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-29581584105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13248KRRMVKVSDESKNKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452450.11e-138PREDICTED: trichome differentiation protein GL1-like
SwissprotQ9SEZ49e-61MY105_ARATH; Transcription factor MYB105
TrEMBLM4FD661e-124M4FD66_BRARP; Uncharacterized protein
STRINGBra039036.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.11e-100myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]