![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC614_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 29443.8 Da PI: 5.4217 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.3e-18 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eql++Le+ Fe ++++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k RrC614_p1 78 KKRRLNMEQLKTLEKNFELGNKLDSDRKLELARALGLQPRQIAIWFQNRRARSK 131 456899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 120.8 | 7.2e-39 | 77 | 168 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eq+k+LE++Fe +kL+++rK elar+Lglqprq+a+WFqnrRAR ktkqlE+dy+aLkr++++lk+en+ L++++++L++++ RrC614_p1 77 EKKRRLNMEQLKTLEKNFELGNKLDSDRKLELARALGLQPRQIAIWFQNRRARSKTKQLERDYDALKRQFESLKDENDLLQTQNQKLQAQVI 168 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.52E-19 | 60 | 135 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-18 | 68 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-18 | 76 | 137 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.5E-15 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-15 | 78 | 134 | No hit | No description |
PRINTS | PR00031 | 4.5E-6 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.5E-6 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
CDD | cd14686 | 0.00658 | 126 | 167 | No hit | No description |
Pfam | PF02183 | 2.2E-15 | 133 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MSCNNGLAFF PANFSLQNHH LEEEEDHPQY LLPSCTPPQD FHGFLGKRSP MPNVEGFCNL 60 EMNGEEDFSD DGSKMGEKKR RLNMEQLKTL EKNFELGNKL DSDRKLELAR ALGLQPRQIA 120 IWFQNRRARS KTKQLERDYD ALKRQFESLK DENDLLQTQN QKLQAQVIAL KSKEPIETIN 180 LNKEEGSCSN RSENISGDIR PGHPPSSPTA TTMQFFHNSS SEQRMVKEEN SISNMFCGMD 240 DQTGFWPWLD QQHYN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 125 | 133 | RRARSKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189385 | 0.0 | AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018448114.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-23 | ||||
Swissprot | Q8LFD3 | 1e-153 | ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23 | ||||
TrEMBL | A0A397YKC5 | 0.0 | A0A397YKC5_BRACM; Uncharacterized protein | ||||
STRING | Bra016300.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo8g076330.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26960.1 | 1e-155 | homeobox protein 23 |
Publications ? help Back to Top | |||
---|---|---|---|
|