PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GATA

Protein Properties

Length: 226aa MW: 24106.2 Da PI: 9.3982

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6142_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.5	1.8e-18	89	123	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt kTplWR gp g+k+LCnaCG++ rkk++ RrC6142_p4 89 CVDCGTNKTPLWRGGPAGPKSLCNACGIKSRKKRQ 123 *********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	12.031	83	119	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.4E-11	83	134	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.75E-12	84	132	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.9E-14	87	123	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	8.30E-11	88	122	No hit	No description
Pfam	PF00320	3.4E-16	89	123	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	89	114	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
SSPPSTLSLS HLSSSNTLSA SQEELSDSSL LFLLLVDTFS LSSKWINMSM TEESKTTKLE 60 SAGDSSDVEN GNCSSSGSGG GGGDTKKTCV DCGTNKTPLW RGGPAGPKSL CNACGIKSRK 120 KRQAALGIKQ EDSNKMKNNK SNDSCLAPDN QTVKNGKGDS GNVKNKIKTE TEDCNDKKSV 180 KRGSRFLDLG FKVPVMKRSV VEKKRVWMKL GEEERAAVLL MALSCG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018483743.1	1e-109	PREDICTED: GATA transcription factor 17-like
Swissprot	Q9LIB5	1e-57	GAT17_ARATH; GATA transcription factor 17
TrEMBL	A0A0D3DEC2	3e-86	A0A0D3DEC2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F981	3e-86	A0A3P6F981_BRAOL; Uncharacterized protein
STRING	Bo7g104200.1	5e-87	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13816	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16141.1	3e-67	GATA family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795] Ranftl QL,Bastakis E,Klermund C,Schwechheimer C LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2295-311 [PMID:26829982]