PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6135_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 326aa MW: 36740.6 Da PI: 6.965

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6135_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	66.5	4.1e-21	120	191	1	59
---SS-EEEEEEE--TT-SS-E..........EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefpr..........sYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g++fpr +Y+rCt++ gC+++k+v+rs+edp ++ei+Y+g H ++ RrC6135_p2 120 LDDGFSWRKYGQKDILGAKFPRlenififwcrGYHRCTYRksqGCEATKQVQRSNEDPVLFEIIYRGIHSCS 191 59****************9544444444448**98889***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-22	117	192	IPR003657	WRKY domain
SuperFamily	SSF118290	1.23E-19	119	192	IPR003657	WRKY domain
SMART	SM00774	1.4E-34	120	192	IPR003657	WRKY domain
PROSITE profile	PS50811	16.478	120	189	IPR003657	WRKY domain
Pfam	PF03106	1.7E-18	121	190	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MERNSNGREW EKMKKELNEL MTEGRDYAHQ LKSQLGSTSS QESREHLAKK ILESYHKSLT 60 IMNYSGELDQ VSPHSHGGGS PKSDDSDHQE PHIIQSSKKS MPRWTQKVRI APGVVIDRAL 120 DDGFSWRKYG QKDILGAKFP RLENIFIFWC RGYHRCTYRK SQGCEATKQV QRSNEDPVLF 180 EIIYRGIHSC SQASAVGSTI PVQVLEPNQA QEQENLEIMT TSLDTSHHNY NHQAHLHQSL 240 HYPLPSTQNL ESNNVLLQQK DHNIGFLGST SYSDLGTNVN YHFLAPHDAG SASHSTINSP 300 TTAGLESPFE SFSPNHPFGG FGGFYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-16	114	189	8	75	Disease resistance protein RRS1
5w3x_D	4e-16	114	189	8	75	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250\|UniProtKB:Q9SUP6}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid (SA). {ECO:0000269\|PubMed:22268143}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454829.1	0.0	PREDICTED: probable WRKY transcription factor 30
Swissprot	Q9FL62	1e-150	WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBL	A0A0D3E1H5	0.0	A0A0D3E1H5_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EA37	0.0	A0A3P6EA37_BRAOL; Uncharacterized protein
STRING	Bo9g013780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12595	19	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24110.1	1e-143	WRKY DNA-binding protein 30

Publications ? help Back to Top
Jiang W,Wu J,Zhang Y,Yin L,Lu J Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses. Protoplasma, 2015. 252(5): p. 1361-74 [PMID:25643917] Kanofsky K,Bahlmann AK,Hehl R,Dong DX Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters. Plant Cell Rep., 2017. 36(6): p. 971-986 [PMID:28341984]