PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6131_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 377aa    MW: 41463.6 Da    PI: 6.699
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6131_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.82.1e-27139193156
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 kp+++WtpeLH++Fv+ave+L G +kA+P++ile+m+vk+L +++v+SHLQkYR++
  RrC6131_p1 139 KPKVDWTPELHRNFVQAVEKL-GVDKAVPSRILEIMNVKSLNRHNVASHLQKYRSH 193
                 79*******************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.682136195IPR017930Myb domain
SuperFamilySSF466892.33E-18137196IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-27137196IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25139193IPR006447Myb domain, plants
PfamPF002497.8E-7142191IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLTVSPLVVN TTSRDHYMAA DFADFTTDDL PDFTAAEGSL DVLDGIDFYD DLFIEFNGDD  60
VLPDLEIDSD VLGEYSGSGR DEDQEMEGNT SAASETSERD GGRCKPEGGA STDKTVRQGK  120
RKGKKIKGCF SNDTGIKKKP KVDWTPELHR NFVQAVEKLG VDKAVPSRIL EIMNVKSLNR  180
HNVASHLQKY RSHRKHLLAR EAEAASWNLR RHATVAVPEG EKLSMAHPAL GYPPHVTPLH  240
QGHFRPFHVW GHPTWPKHKP NNPSSSLHRT FPIPPAVAVA PSCWPGQPPY WHLRPLYPQG  300
YGMASSNHSS IGVPTRQLGP TNPPIDIHPS NESIDAAIGD VITKPWLPLP LGLNPPSVDG  360
VMTELQRQGV SNVPPLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17137191357ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK1 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478265.10.0PREDICTED: transcription activator GLK2-like
SwissprotQ9FFH00.0GLK2_ARATH; Transcription activator GLK2
TrEMBLA0A078GC870.0A0A078GC87_BRANA; BnaA06g36250D protein
TrEMBLA0A397Z4L90.0A0A397Z4L9_BRACM; Uncharacterized protein
STRINGBra033726.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22092773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.11e-180GOLDEN2-like 2
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Han XY, et al.
    GOLDEN2-LIKE transcription factors coordinate the tolerance to Cucumber mosaic virus in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2016. 477(4): p. 626-632
    [PMID:27346129]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Bastakis E,Hedtke B,Klermund C,Grimm B,Schwechheimer C
    LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 582-599
    [PMID:29453227]
  6. Zubo YO, et al.
    Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families.
    Plant Physiol., 2018. 178(1): p. 130-147
    [PMID:30002259]