PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6094_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 459aa    MW: 50920.4 Da    PI: 4.6067
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6094_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.7e-35271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++e++sws+ +nsfvv++  ef+k +Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +++k+ll++i 
    RrC6094_p3  27 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWNVPEFSKVLLPKHFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEGFLRDQKQLLKSIV 114
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   rk+ 
    RrC6094_p3 115 RKRP 118
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-3422116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-3823116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEPVQSAPPA NSNSPSIPPP VNSVPPFLSK TYDMVDDPST NEVVSWSSGN NSFVVWNVPE  60
FSKVLLPKHF KHNNFSSFVR QLNTYGFRKV DPDQWEFANE GFLRDQKQLL KSIVRKRPSH  120
VQQNQQQTQV QNSPVGACVE VGKFGIEEEV ERLKRDKNVL MQELVRLRQQ QQATEHQLQN  180
VGQKVEVMEQ RQQQTMSFLA KAVQSPGFLN QLVQQNNNND GNKHIQGSNK KRRLPGDDEQ  240
ENCKGHDDEA NGLNRQIVKY QPSINEAAQT MLRQILNRSS SPRCESVSNY APSSNSLNSA  300
DRVSGVTMDE VSPNSALSAM KQVHEAGLVH HPQAGPCPSE GVAAAAASWS PESDLAGFET  360
GDGVCFDPIM AALGGSLEIE SDEISPVGEG EVTELQNEAP KLPGVQDSFW EQFFADETPL  420
IEDDILSGSV ENSDIVMEQQ EMNHLTEQME LLSSATQRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-241411617129Heat shock factor protein 1
5d5v_B1e-241411617129Heat shock factor protein 1
5d5v_D1e-241411617129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462631.10.0PREDICTED: heat stress transcription factor A-1b-like isoform X1
SwissprotO818210.0HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A3N6RAY60.0A0A3N6RAY6_BRACR; Uncharacterized protein
STRINGXP_006400223.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.20.0heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]