PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6081_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 303aa    MW: 34789.2 Da    PI: 6.2406
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6081_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14114165155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h  +Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A+ Y+k+L+
  RrC6081_p1 114 QRMTHITVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAISYVKELE 165
                 79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.30E-12112169No hitNo description
Gene3DG3DSA:4.10.280.101.6E-13112167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.993113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16113176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-12114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MPLEAVVNPQ DPFEFGYLSN CKDFMFHDFY YHEEIVSQDT KNNTDKLGKE QSYVENNEEE  60
LLWEDHHHQC PLVPSLEEEL GLPALDVESH PPVQQRRKRR RTRSNKNKEE IENQRMTHIT  120
VERNRRKQMN EYLAVLRSLM PPSYAQRGDQ ASIVGGAISY VKELEHILQS IKPRRTTTTS  180
HEADTSTSSL VCPFPDFFTF PQYSTKSSSE VESSSSPAEI EVTVAEGHAN IKIMAKKKPR  240
QLLKLVASIQ SLRLTILHLN VTTMDNLILY SISVKVEEGS QLNTVEHIAT ALNQIIRRIQ  300
EES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100QRRKRRR
296100RKRRR
396101RKRRRT
4114125RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434554.10.0PREDICTED: transcription factor bHLH94-like isoform X3
SwissprotQ9SK911e-155BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A3P6ELQ41e-179A0A3P6ELQ4_BRAOL; Uncharacterized protein
STRINGBo7g057920.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-142bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]