PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6079_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23569.9 Da    PI: 7.8025
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6079_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.81.1e-215199149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i+++ +rqvtfskRr+g++KKA ELSvLC a++ +i fs  +++y +
  RrC6079_p1 51 KEIKEENRRQVTFSKRRTGLFKKAAELSVLCCAQIGIITFSRCDRVYSF 99
                6799******************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.65643103IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-2443102IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.24E-2244116IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-194565IPR002100Transcription factor, MADS-box
PfamPF003196.9E-215399IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-196580IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-1980101IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MENGEATPTP CLLSTEQKPM PTTPNLGKKQ RKERKVQNPK TTKGRQRIEI KEIKEENRRQ  60
VTFSKRRTGL FKKAAELSVL CCAQIGIITF SRCDRVYSFG NVGTLTEKYL RKSPVTLRSK  120
LGDDVALEGD GGSMWWEREV ESVPEEEMEE YVKGLSGLRE NLWTRICELG GDPTVQMNAQ  180
AFPDLMAPVD WKMVDENLTI RNDQDQA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469618.11e-130PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A078IML81e-111A0A078IML8_BRANA; BnaC06g24370D protein
TrEMBLA0A0D3CX451e-111A0A0D3CX45_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QC051e-111A0A3N6QC05_BRACR; Uncharacterized protein
TrEMBLA0A3P6FXM61e-111A0A3P6FXM6_BRAOL; Uncharacterized protein
STRINGBo6g091550.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.13e-57M-type_MADS family protein