PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC6078_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 338aa MW: 39090.5 Da PI: 9.6839

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6078_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.7	2.3e-21	6	55	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s + +++ +R+++i KKA+ELS+LC + v+vi+++++g+l+++++ RrC6078_p4 6 SSSSNSLAATSLNNRLKTIYKKASELSILCRVAVSVIYYGPNGELKTWPK 55 789999******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	5.62E-13	15	84	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.825	15	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-11	15	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MRASSSSSSN SLAATSLNNR LKTIYKKASE LSILCRVAVS VIYYGPNGEL KTWPKEKEVV 60 KDMALKYKAA TKRKNSYNLR DFLEGKLDND KNLKENKKKK KTKREFENVK YPEWYPALDH 120 YSPDQLHQLI LSLQGTLSTM EERIRVLEAQ KQKSTNLVHQ NLTKHRHDHY QTVQPLNPSK 180 CSLYLYNHDD ATLSQLPLSA SHSNQLINYQ NHFRMQQQKH YDPCVANTQD HPALLSVQES 240 RLKNQFMKQQ ERNMCMMNNT TNSNVLLHPC PLNTIPKELS FDLQKNPKDD MVGRHKFSQD 300 FPYLFLAYAD SPQLQTSLPS IHQTIPNINL IPDNSSCL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018435558.1	0.0	PREDICTED: agamous-like MADS-box protein AGL75
TrEMBL	A0A3P6DKJ4	0.0	A0A3P6DKJ4_BRAOL; Uncharacterized protein
STRING	Bo00615s090.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65330.1	2e-86	AGAMOUS-like 78