PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6078_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 338aa    MW: 39090.5 Da    PI: 9.6839
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6078_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.72.3e-21655251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +++++s + +++ +R+++i KKA+ELS+LC + v+vi+++++g+l+++++
  RrC6078_p4  6 SSSSNSLAATSLNNRLKTIYKKASELSILCRVAVSVIYYGPNGELKTWPK 55
                789999******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.62E-131584IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.8251557IPR002100Transcription factor, MADS-box
PfamPF003191.0E-111553IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRASSSSSSN SLAATSLNNR LKTIYKKASE LSILCRVAVS VIYYGPNGEL KTWPKEKEVV  60
KDMALKYKAA TKRKNSYNLR DFLEGKLDND KNLKENKKKK KTKREFENVK YPEWYPALDH  120
YSPDQLHQLI LSLQGTLSTM EERIRVLEAQ KQKSTNLVHQ NLTKHRHDHY QTVQPLNPSK  180
CSLYLYNHDD ATLSQLPLSA SHSNQLINYQ NHFRMQQQKH YDPCVANTQD HPALLSVQES  240
RLKNQFMKQQ ERNMCMMNNT TNSNVLLHPC PLNTIPKELS FDLQKNPKDD MVGRHKFSQD  300
FPYLFLAYAD SPQLQTSLPS IHQTIPNINL IPDNSSCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435558.10.0PREDICTED: agamous-like MADS-box protein AGL75
TrEMBLA0A3P6DKJ40.0A0A3P6DKJ4_BRAOL; Uncharacterized protein
STRINGBo00615s090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.12e-86AGAMOUS-like 78