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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC6049_p2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
AP2 |
Protein Properties |
Length: 291aa MW: 32052.3 Da PI: 8.1668 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC6049_p2 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 40.7 | 5.8e-13 | 73 | 119 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+
RrC6049_p2 73 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEVEAARAYDKAAI 119
89********.7******5553..2.26**********99*********97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 291 aa
Download sequence Send
to blast |
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFTLG DYEEDMKQVQ NLSKEEFVHI 60 LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDSEVEA ARAYDKAAIS 120 SNGREAVTNF ELSSYQNEIN SETNNQGGHD NKLDLSLGMS PSPGNASKQN GRLFHYPSNT 180 YETQRGVSLT IGNEFMGKPV NAPLPYGSYW NGYNNPVEGR ATEKRSEAEG GGMMSNWGWQ 240 GPGQTSAMRP QPPGTQPQLF SVAAASSGFS NFRQQPPNDN ASSLGYFYPQ P
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |