PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6049_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 291aa    MW: 32052.3 Da    PI: 8.1668
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6049_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.75.8e-1373119151
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ 
  RrC6049_p2  73 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEVEAARAYDKAAI 119
                 89********.7******5553..2.26**********99*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.864138IPR001471AP2/ERF domain
SMARTSM003804.5E-11144IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-9338IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-11338IPR001471AP2/ERF domain
PfamPF008471.3E-873119IPR001471AP2/ERF domain
CDDcd000185.20E-2473133No hitNo description
SuperFamilySSF541713.07E-1673132IPR016177DNA-binding domain
SMARTSM003802.6E-2974137IPR001471AP2/ERF domain
PROSITE profilePS5103215.27774131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-1674132IPR001471AP2/ERF domain
PRINTSPR003675.7E-67586IPR001471AP2/ERF domain
PRINTSPR003675.7E-6113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFTLG DYEEDMKQVQ NLSKEEFVHI  60
LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDSEVEA ARAYDKAAIS  120
SNGREAVTNF ELSSYQNEIN SETNNQGGHD NKLDLSLGMS PSPGNASKQN GRLFHYPSNT  180
YETQRGVSLT IGNEFMGKPV NAPLPYGSYW NGYNNPVEGR ATEKRSEAEG GGMMSNWGWQ  240
GPGQTSAMRP QPPGTQPQLF SVAAASSGFS NFRQQPPNDN ASSLGYFYPQ P
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6183171e-109KC618317.1 Cardamine flexuosa TOE1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631232.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK031e-147RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3P6C1H10.0A0A3P6C1H1_BRAOL; Uncharacterized protein
STRINGBo4g070350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-164related to AP2.7