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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6034_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 169aa MW: 19902.5 Da PI: 9.6215 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 79.6 | 4.1e-25 | 3 | 53 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++ Y+eC++NhAa+lG++avDGC+E+ + +++ CaACgCHR++HRr + RrC6034_p1 3 SSCLYRECMRNHAAKLGSYAVDGCREYSQP------STGDLCAACGCHRSYHRRIDV 53 5789***********************998......56789*************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-21 | 4 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.4E-18 | 6 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 18.087 | 7 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-16 | 7 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-16 | 93 | 166 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.36E-8 | 99 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.5E-29 | 108 | 166 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MQSSCLYREC MRNHAAKLGS YAVDGCREYS QPSTGDLCAA CGCHRSYHRR IDVQPSGQVT 60 RARFPFTSLR RVKQLARLKW KAAAEEREEQ EEEDTEETST EEKMTVNRRR KSKFTAEQRE 120 AMRDYAAKLG WTLKDKRAVR EEISVFCERI GVTRYLFKTW VNNNKKFYH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 112 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00143 | DAP | Transfer from AT1G14687 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437252.1 | 1e-123 | PREDICTED: zinc-finger homeodomain protein 14 | ||||
Swissprot | Q9LQW3 | 7e-94 | ZHD14_ARATH; Zinc-finger homeodomain protein 14 | ||||
TrEMBL | A0A078H8D4 | 1e-103 | A0A078H8D4_BRANA; BnaA09g45550D protein | ||||
TrEMBL | A0A397Y4H3 | 1e-103 | A0A397Y4H3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EDF2 | 1e-103 | M4EDF2_BRARP; Uncharacterized protein | ||||
STRING | Bra026812.1-P | 1e-104 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13728 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14687.1 | 3e-94 | homeobox protein 32 |