PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6022_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25664.7 Da PI: 6.3737 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.2e-19 | 62 | 115 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ RrC6022_p2 62 KRKLSDEQVRMLEMSFGVEHKLESERKNRLASELGLDPRQVAVWFQNRRARWKN 115 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 120.6 | 8.2e-39 | 61 | 151 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+ls+eqv++LE+sF e+kLe+erK++la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+++++ + +++rL++ev +L+e+l RrC6022_p2 61 RKRKLSDEQVRMLEMSFGVEHKLESERKNRLASELGLDPRQVAVWFQNRRARWKNKRLEDEYTKLKNEHENAVVQKCRLDSEVLHLKEQLY 151 8***************************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.682 | 56 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.02E-18 | 59 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-18 | 59 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.01E-15 | 61 | 117 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 62 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 67 | 115 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.5E-5 | 87 | 96 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 91 | 114 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.5E-5 | 96 | 112 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MNNQHVNDHN LLLISQMYPN VYASLVPQQV DSKPVRPRRR RRSKNVEMAE EAGDGSNGWF 60 RKRKLSDEQV RMLEMSFGVE HKLESERKNR LASELGLDPR QVAVWFQNRR ARWKNKRLED 120 EYTKLKNEHE NAVVQKCRLD SEVLHLKEQL YDAEREIQRL AQRVEGAASN SPISSFISVE 180 ANQATPFFGD YQIGDDCDGY ENLFYSPEYI DGLEWMSQL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437401.1 | 1e-163 | PREDICTED: homeobox-leucine zipper protein ATHB-21-like isoform X2 | ||||
Swissprot | Q9ZU70 | 1e-120 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A3P6B354 | 1e-135 | A0A3P6B354_BRACM; Uncharacterized protein | ||||
STRING | Bra028099.1-P | 1e-126 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-119 | homeobox protein 21 |
Publications ? help Back to Top | |||
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