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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC60080_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 90aa MW: 9743.83 Da PI: 9.1187 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.6 | 7e-06 | 38 | 75 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+++++ + Lr+++P + ++ a++L +Av+Y+ksL+ RrC60080_p1 38 RREMKKMMGVLRRIVPGG-----EEMNTASVLDEAVQYLKSLK 75 889999**********95.....69****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.236 | 25 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-7 | 38 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-8 | 38 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.93E-5 | 38 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
DGGDSEEVRS TARNSSYGYN KQSLSGSASS CNNEGKGRRE MKKMMGVLRR IVPGGEEMNT 60 ASVLDEAVQY LKSLKLEAQK LGVGHFSNQS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC008030 | 7e-75 | AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence. | |||
GenBank | AC022455 | 7e-75 | AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence. | |||
GenBank | AF361607 | 7e-75 | AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds. | |||
GenBank | AK230374 | 7e-75 | AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05. | |||
GenBank | AK318702 | 7e-75 | AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13. | |||
GenBank | AY074843 | 7e-75 | AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds. | |||
GenBank | CP002684 | 7e-75 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010499513.2 | 3e-39 | PREDICTED: transcription factor bHLH144-like | ||||
Refseq | XP_013650577.1 | 2e-40 | transcription factor bHLH144-like | ||||
Swissprot | Q9ASX9 | 8e-24 | BH144_ARATH; Transcription factor bHLH144 | ||||
TrEMBL | A0A397YJ46 | 1e-37 | A0A397YJ46_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EN14 | 1e-37 | M4EN14_BRARP; Uncharacterized protein | ||||
STRING | Bra030184.1-P | 2e-38 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6195 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 3e-26 | bHLH family protein |
Publications ? help Back to Top | |||
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