PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5876_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 271aa    MW: 30892.7 Da    PI: 7.6909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5876_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-083176346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++ +a + +  +   +W ++a++++ g+t  ++   + k
       RrC5876_p2 31 TWTKEENKKFERALAIYADDtpdRWFKVAAMIP-GKTISDVMTQYSK 76
                     7*****************99*************.****999888866 PP
2Myb_DNA-binding409e-13131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
       RrC5876_p2 131 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKY 175
                      8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.1212780IPR017884SANT domain
SMARTSM007171.7E-72880IPR001005SANT/Myb domain
PfamPF002498.7E-73076IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-103084IPR009057Homeodomain-like
CDDcd001672.54E-73177No hitNo description
PROSITE profilePS5129418.108124180IPR017930Myb domain
SuperFamilySSF466891.08E-15126179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16128179IPR006447Myb domain, plants
SMARTSM007179.9E-11128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-11128180IPR009057Homeodomain-like
PfamPF002493.9E-10131175IPR001005SANT/Myb domain
CDDcd001676.83E-10131175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
METLHPLLLS HVPTSDHRFV VQEMMCLQTS TWTKEENKKF ERALAIYADD TPDRWFKVAA  60
MIPGKTISDV MTQYSKLEED LFDIEAGLVP IPGYPSAGFD QLASPHDFDL YRKRPNGGAR  120
GFDQDRRKGV PWTEEEHRRF LLGLLKYGKG DWRNISRNFV GSKTPTQVAS HAQKYYQRQL  180
SGAKDKRRPS IHDITTVNLL NKNITRTSSD NDRFLQQSDE PKLGFTDRDN AEDGVMFLGQ  240
NLSSVLSPYE PAFKFTGTNV YGDGAYCLTR S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1632981177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445577.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H75e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A397XQG40.0A0A397XQG4_BRACM; Uncharacterized protein
TrEMBLM4CY370.0M4CY37_BRARP; Uncharacterized protein
STRINGBra009134.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-176MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]