PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC585_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 470aa    MW: 51292.9 Da    PI: 9.3728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC585_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001183103323
                ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                C+ C+k F r  nL+ H r H
  RrC585_p5  83 CEVCNKGFQREQNLQLHRRGH 103
                *******************88 PP
2zf-C2H214.20.00013158180123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k++  +s+ k H +t+
  RrC585_p5 158 FKCEKCSKRYAVQSDWKAHSKTC 180
                89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-780103No hitNo description
Gene3DG3DSA:3.30.160.608.8E-680103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9781103IPR007087Zinc finger, C2H2
SMARTSM003550.02581103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM00355110123153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-6146179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-7153178No hitNo description
SMARTSM0035588158178IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MSSSYNNSIS SSSTQSFLLA SAATGANNFN REETAMTMIQ QPNSVAPLPP PKKRRNQPGN  60
PNPDAEVIAL SPKTIMATNR FLCEVCNKGF QREQNLQLHR RGHNLPWKLK QKSKQEVIRR  120
KVYLCPEPTC VHHDPSRALG DLTGIKKHYY RKHGEKKFKC EKCSKRYAVQ SDWKAHSKTC  180
GTKEYRCDCG TIFSRRDSYI THRAFCDALI QESARNPTVS FTAMAAAAGG SGSRPGFYGS  240
AASALSHNHF GNNSSTSFTP LAAGYNLNRS STEKFEAFVS QSTNPNPGPT NFLMQCPPNQ  300
GLMAQNDQTL MNQHGLISLG DNINNNNNNN SLFNLGYFQE NTKNSDHTSV PSLFTNADNN  360
DPSALFRGLT SSSSSSVVVN DFGDSDNGNL QGLMNSLAAT TDQQGRPSSN LFDLHFGNNL  420
SMGGSDRLTL DFLGVSGGNV SSVNGRGGRS GAPLDVDMKF SRPNNPFEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34154220369Zinc finger protein JACKDAW
5b3h_F8e-34154220369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531830.0AK353183.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-38-E19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451217.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
RefseqXP_018451219.10.0PREDICTED: protein indeterminate-domain 6, chloroplastic-like
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A397YMC50.0A0A397YMC5_BRACM; Uncharacterized protein
STRINGBra016694.1-P0.0(Brassica rapa)
STRINGBo8g066120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.20.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]