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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
RrC583_p3 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
CO-like |
Protein Properties |
Length: 375aa MW: 41549.6 Da PI: 6.7711 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
RrC583_p3 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 32.1 | 2.3e-10 | 13 | 56 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+++++k++++fC ++ +lC++C ++ H+ H++v
RrC583_p3 13 ARACDNCSKKQAHWFCAADDAFLCQSCDTSVHSAnalarrHDRV 56
578*****************************657788888876 PP
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2 | CCT | 66.9 | 5.8e-23 | 317 | 360 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RYkeKr++R+F K+irYe+RK++Ae RpR+KGrFvk++
RrC583_p3 317 REASVSRYKEKRRKRLFTKTIRYEVRKQYAEIRPRMKGRFVKRS 360
9*****************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MKSLANAVRA KTARACDNCS KKQAHWFCAA DDAFLCQSCD TSVHSANALA RRHDRVRLKN 60 STSPLQEAAT WHQWFTRKPR TPRGSGGKRN NNSPTFHGLV PEISAEDQTD SSDVEEQLMI 120 CQVPVVDPTV VEPKIKVPMM RSDDQEVDKD NAESCLNGFL PTDMELEDFA ADVETLLGRG 180 LDTEYYTMEE LGLSNTEMFK VKKDNDRDGT TMPFDLNFGF YSQNTYEEDA IKNVESSGEC 240 VEVKEEEQKN VLMLNLDYDL VISTWGGQGL PWTSGGPPDI GITGSPAVSM VGKGGGSHKK 300 RNVGGCLLSS VVGDGGREAS VSRYKEKRRK RLFTKTIRYE VRKQYAEIRP RMKGRFVKRS 360 SLAASAGNSP LGVNN
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 1e-170 | B-box type zinc finger protein with CCT domain |