PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5793_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 643aa    MW: 73219.5 Da    PI: 8.8001
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5793_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07463505140
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +++W++eE + l ++  ++++g   +W+ I++++g+gR+ +++
       RrC5793_p4 463 KQPWSKEEIDMLRKGMIKYPKGtsrRWEVISEYIGTGRSVEEI 505
                      79************************************99876 PP
2Myb_DNA-binding26.91.1e-08586629445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  +  lv+a k ++++   +W+++a+ ++ gRt  qck ++ 
       RrC5793_p4 586 WSAVQERALVQALKTFPKEtsqRWERVAAAVP-GRTVVQCKKKFA 629
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.6E-2196200IPR001623DnaJ domain
SuperFamilySSF465654.58E-2197178IPR001623DnaJ domain
SMARTSM002712.6E-1999174IPR001623DnaJ domain
PfamPF002261.3E-17100179IPR001623DnaJ domain
PROSITE profilePS5007618.592100182IPR001623DnaJ domain
CDDcd062571.52E-12100171IPR001623DnaJ domain
PRINTSPR006253.9E-9105123IPR001623DnaJ domain
PRINTSPR006253.9E-9123138IPR001623DnaJ domain
PRINTSPR006253.9E-9154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.284458513IPR017877Myb-like domain
SuperFamilySSF466891.35E-7459506IPR009057Homeodomain-like
SMARTSM007179.3E-7462515IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-5462505IPR009057Homeodomain-like
PfamPF002493.9E-6463505IPR001005SANT/Myb domain
CDDcd001672.12E-4465505No hitNo description
SMARTSM007171.6E-8582634IPR001005SANT/Myb domain
SuperFamilySSF466894.56E-9584631IPR009057Homeodomain-like
PfamPF002494.2E-7586630IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-5586630IPR009057Homeodomain-like
PROSITE profilePS500907.143586632IPR017877Myb-like domain
CDDcd001671.72E-6586632No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MPSLRTKSTV KLITYSEELV DGKPLYASSN SLPVKALNRE PAGHAFHSAA LKLHGCAEEE  60
PTDSEGDDKK AGDDKEKEYV PSFNSYSNKG KKKSGTQQQD HYALLGLSNL RYLATEDQIR  120
KSYREAALKH HPDKMASLLL AEETEEAKEA KKEEIESRFK AIQEAYEVLM DPLKRRIFDS  180
TDEFDDEVPT DCAPQDFFKV FGPAFKRNAR WSVNQRIPTD LGDENTKLKE VDRFYNFWYA  240
FKSWREFPDE EEHDLEQADS REERRWMEKE NARTTAKARK EEHARIRTLV DNAYRKDPRI  300
VKRKEEEKAE KQQKKDAKLM AKKKQEEEAA VAAAEEKKRK EEEEKRAVES AQQQKKAKEK  360
EKKLIRKERN RLRALSAPVL TQRLLDISEE DIENLCMTLN LEQLQSLCDK MGNKEGMELA  420
KVIKEGCSSS NSSRDQEAAN SKEKESEKTN GERVSVLEST QKKQPWSKEE IDMLRKGMIK  480
YPKGTSRRWE VISEYIGTGR SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPTATIASPL  540
STREELGESL PATAKVKQPP SKEPVAGQSS DSNGEASGSS ETADGWSAVQ ERALVQALKT  600
FPKETSQRWE RVAAAVPGRT VVQCKKKFAE LKEIIRSKKT GGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1419630020123Zuotin
5dje_B4e-1419630020123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321339KKKQEEEAAVAAAEEKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895470.0AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491635.10.0PREDICTED: dnaJ homolog subfamily C member 2
RefseqXP_018491636.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0D3CL700.0A0A0D3CL70_BRAOL; Uncharacterized protein
STRINGBo5g136560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain