PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC5777_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 101aa MW: 11513.9 Da PI: 8.6132

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5777_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	22	44	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs+ L H+ +H RrC5777_p4 22 HQCKLCNKIFSSYQALGGHMTSH 44 79******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.09E-7	18	46	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.2E-4	18	45	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.1E-11	21	45	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.743	22	49	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0071	22	44	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	24	44	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MECSVSDDEI VTESGGKGDD VHQCKLCNKI FSSYQALGGH MTSHRMIKSK SKKSSREESV 60 DRDCEDDESV KKEKKMHRRC VANCSRTFYI NHLRGGGRKE R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475336.1	2e-50	PREDICTED: uncharacterized protein LOC108846619
TrEMBL	A0A3P6AQI6	6e-23	A0A3P6AQI6_BRAOL; Uncharacterized protein
STRING	Bra006302.1-P	2e-19	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7519	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15480.1	1e-14	C2H2 family protein