PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 214aa MW: 24407.2 Da PI: 6.6071

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5744_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.7e-14	98	142	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky RrC5744_p3 98 PWSESEHKLFLVGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 142 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	8.332	1	57	IPR017930	Myb domain
SMART	SM00717	3.0E-7	4	55	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.2E-11	6	61	IPR009057	Homeodomain-like
CDD	cd00167	3.27E-5	8	53	No hit	No description
PROSITE profile	PS51294	17.707	91	147	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-15	93	148	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.0E-16	94	146	IPR006447	Myb domain, plants
SMART	SM00717	7.7E-11	95	145	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-10	97	141	IPR009057	Homeodomain-like
Pfam	PF00249	3.3E-12	98	142	IPR001005	SANT/Myb domain
CDD	cd00167	1.94E-9	98	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MDMATNQWTR SEDKMFEQAL VLFPEGSPNR WEIIADQLQK SSGEVKEHYE ALVHDVIEIE 60 SGRVHVPYYI DDSAGWDTAG QVTFGCKHGE NERKRGTPWS ESEHKLFLVG LKRYGKGDWR 120 SISRNVVVTR TPTQVASHAQ KYFLRQNSVK KERKRSSIHD ITTVDTGLAM PGSNMDWNRQ 180 EGSPVQPQQQ QHIMSEFGQQ TTPGGHFEDL GFGM

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189388	5e-81	AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444158.1	1e-151	PREDICTED: transcription factor DIVARICATA
Swissprot	Q8S9H7	1e-54	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0D3EHV4	1e-130	A0A0D3EHV4_BRAOL; Uncharacterized protein
STRING	Bo9g178980.1	1e-131	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5127	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-120	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]