PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5707_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 291aa    MW: 33376.4 Da    PI: 7.0852
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5707_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-5261341128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdeel+++yLk+kve+ ++el evi+ +d+yk++Pw+Lp k  + +++ +w+fF++rdkky++g r+nr tk+gyWkatgkd++++++++
  RrC5707_p2   6 LPPGFRFHPTDEELIDYYLKRKVESLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMKWFFFCSRDKKYPNGFRTNRGTKAGYWKATGKDRKITCRSS 103
                 79****************************.99**************96435556888***************************************** PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++g +ktLvfykgrap g +t+W+mheyrl
  RrC5707_p2 104 SVIGYRKTLVFYKGRAPLGDRTTWIMHEYRL 134
                 *****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-583160IPR003441NAC domain
PROSITE profilePS5100557.4246160IPR003441NAC domain
PfamPF023652.1E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGSSCLPPGF RFHPTDEELI DYYLKRKVES LEIELEVIPV IDLYKFDPWE LPDKSFLPNR  60
DMKWFFFCSR DKKYPNGFRT NRGTKAGYWK ATGKDRKITC RSSSVIGYRK TLVFYKGRAP  120
LGDRTTWIMH EYRLRDDESS LQGSQHCYKG AFVLCRVAKK NKIKTSSKIR GNLSEQALGS  180
GESSGYSSRA TSPSRDGTML FHSFVNPVST ETDSSNIWIS PDFILDSSKE YPQIQDFTSE  240
NLHDFDFPVM NNQNVDFLAG TLYSNVDQHM DESMQTGYWT NCGFDDAGLF G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-47616117166NO APICAL MERISTEM PROTEIN
1ut4_B5e-47616117166NO APICAL MERISTEM PROTEIN
1ut7_A5e-47616117166NO APICAL MERISTEM PROTEIN
1ut7_B5e-47616117166NO APICAL MERISTEM PROTEIN
3swm_A6e-47616120169NAC domain-containing protein 19
3swm_B6e-47616120169NAC domain-containing protein 19
3swm_C6e-47616120169NAC domain-containing protein 19
3swm_D6e-47616120169NAC domain-containing protein 19
3swp_A6e-47616120169NAC domain-containing protein 19
3swp_B6e-47616120169NAC domain-containing protein 19
3swp_C6e-47616120169NAC domain-containing protein 19
3swp_D6e-47616120169NAC domain-containing protein 19
4dul_A5e-47616117166NAC domain-containing protein 19
4dul_B5e-47616117166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00546DAPTransfer from AT5G46590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437053.10.0PREDICTED: NAC domain-containing protein 45-like
SwissprotQ9LS241e-163NAC96_ARATH; NAC domain-containing protein 96
TrEMBLA0A3P6E1T80.0A0A3P6E1T8_BRAOL; Uncharacterized protein
STRINGBra022046.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-165NAC domain containing protein 96
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]