PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SBP

Protein Properties

Length: 305aa MW: 33914.1 Da PI: 8.8463

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5705_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	123.4	1e-38	166	242	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe dls+ak+yhr+h+vCe+hsk+p+v+vsg+e+rfCqqCsr h++sefD +krsCr+rL +hn+rrrk+q RrC5705_p1 166 RCQVDGCELDLSSAKDYHRKHRVCETHSKCPKVIVSGVERRFCQQCSRLHAVSEFDGKKRSCRKRLFHHNARRRKSQ 242 6**************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.0E-33	158	228	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.18	164	241	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.27E-36	165	242	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-30	167	240	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MDCNLRSPLV WDWENLIISN PSKTEHDKKH LTTTTTASEW EIESLFPCFD GLQRVSNDST 60 SFWHNTAVSK NSESISANSA SSSPITRQTK PASESSPCSN IDFVQVKTSS AALEVPAESS 120 DLCLKLGKPT YSGRDSNDAS AGSTKLLAPC RKKSKSCGQS SMQVPRCQVD GCELDLSSAK 180 DYHRKHRVCE THSKCPKVIV SGVERRFCQQ CSRLHAVSEF DGKKRSCRKR LFHHNARRRK 240 SQGVFPLNPE RVVYDQKFAW DVGEYSGVLH QSHRAFSLLS TSSGPLVHPH AQPLSLLFSF 300 DGLPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-25	158	240	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	239	KKRSCRKRLFHHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438726.1	0.0	PREDICTED: squamosa promoter-binding-like protein 11
Swissprot	Q9FZK0	1e-100	SPL11_ARATH; Squamosa promoter-binding-like protein 11
TrEMBL	A0A0D3CE02	1e-126	A0A0D3CE02_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EV53	1e-126	A0A3P6EV53_BRAOL; Uncharacterized protein
STRING	Bo5g051970.1	1e-127	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5004	16	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27360.4	1e-100	squamosa promoter-like 11

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Stief A, et al. Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors. Plant Cell, 2014. 26(4): p. 1792-1807 [PMID:24769482] Liu J, et al. The RhoGAP SPIN6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice. PLoS Pathog., 2015. 11(2): p. e1004629 [PMID:25658451] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]