PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

RrC566_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C3H

Protein Properties

Length: 150aa MW: 16927.6 Da PI: 8.208

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC566_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.8	6e-06	60	81	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 lC++f + +C++Gd+C++ H+ RrC566_p2 60 LCNRFVSSNFCPFGDSCRYFHP 81 8******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.05E-11	4	42	No hit	No description
Pfam	PF06220	7.9E-8	5	37	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	12.596	55	83	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-6	57	82	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-5	60	80	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-4	60	81	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MPSGKYYCDY CEKEFQDTQV ARKRHLQSNP HLRAKSLWYS SSTTSDVNNP QVSSFVPRGL 60 CNRFVSSNFC PFGDSCRYFH PNNVPGNTGY TNNNNTQSLA GLPNQHIQST SLNRDFFSGR 120 AEGTGWFDLP PSLRPPPEQG YPQLPSIDWG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013613001.1	5e-97	PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBL	A0A078G4X2	5e-95	A0A078G4X2_BRANA; BnaA09g04110D protein
STRING	XP_006394904.1	7e-84	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10474	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	3e-74	C3H family protein