PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 350aa MW: 39733.1 Da PI: 6.8703

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC565_p8	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9e-18	83	128	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+++eE++ ++++++ lG++ W+tIa+ ++ gRt++++k++w+++l RrC565_p8 83 RGRFSPEEEQTILNLHAVLGNK-WSTIANNLP-GRTDNEIKNFWNTHL 128 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.401	9	77	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.8E-7	10	80	IPR009057	Homeodomain-like
SMART	SM00717	63	13	79	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.13E-22	63	136	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.466	78	132	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-28	81	133	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-16	82	130	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-16	83	128	IPR001005	SANT/Myb domain
CDD	cd00167	3.47E-12	85	128	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MRRSLCGDDS GLKKGPWTLK KMRNLSTMSK NMAIVAGQLF PSVLVPDLFL LLLFYSFSCD 60 CLNRCGKSCR LRWTNYLRPD IKRGRFSPEE EQTILNLHAV LGNKWSTIAN NLPGRTDNEI 120 KNFWNTHLKK KMIQMGIDPM THRPRPDVFS SLSQLVSMSS NLRDFVDMQL QFQTDQEQTI 180 LKLQTEMAKL KLFQYLLQPP SMNNNINPND LDTLSLFNSI ASFKETNTTS NNLDHGSYLQ 240 DFNSIPSLIG PSSTFPQHLE DNHFKFFTQR ENLPVSPVWL SDPSSSNQSS VPSLDPSSAV 300 SDDDLIRNRY IIEDVNSNLM TSSIRQESGA SASAVWPDHL LDDSIFSNIV

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MRRSLCGDDS GLKKGPWTLK KMRNLSTMSK NMAIVAGQLF PSVLVPDLFL LLLFYSFSCD  60
CLNRCGKSCR LRWTNYLRPD IKRGRFSPEE EQTILNLHAV LGNKWSTIAN NLPGRTDNEI  120
KNFWNTHLKK KMIQMGIDPM THRPRPDVFS SLSQLVSMSS NLRDFVDMQL QFQTDQEQTI  180
LKLQTEMAKL KLFQYLLQPP SMNNNINPND LDTLSLFNSI ASFKETNTTS NNLDHGSYLQ  240
DFNSIPSLIG PSSTFPQHLE DNHFKFFTQR ENLPVSPVWL SDPSSSNQSS VPSLDPSSAV  300
SDDDLIRNRY IIEDVNSNLM TSSIRQESGA SASAVWPDHL LDDSIFSNIV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-20	64	132	40	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250\|UniProtKB:Q9M2D9}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC155342	0.0	AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018474965.1	0.0	PREDICTED: myb-related protein 315-like
Swissprot	Q9SBF3	1e-164	MYB92_ARATH; Transcription factor MYB92
TrEMBL	A0A3P5ZSR8	0.0	A0A3P5ZSR8_BRACM; Uncharacterized protein
STRING	Bra006055.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10280.1	1e-145	myb domain protein 92

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]