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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5633_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 56aa MW: 6035.1 Da PI: 11.0254 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.9 | 4.6e-12 | 15 | 52 | 2 | 39 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 +ienk r +tf+k r g+ KA L+v da++a++ RrC5633_p4 15 KIENKASRATTFTKHRDGLYSKAAQLCVVSDAQIAILA 52 69*********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.493 | 6 | 56 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-4 | 6 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-13 | 7 | 54 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.89E-14 | 7 | 56 | No hit | No description |
PRINTS | PR00404 | 6.1E-9 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-12 | 15 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-9 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-9 | 43 | 56 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 56 aa Download sequence Send to blast |
MVKKGGTKRK PVMTKIENKA SRATTFTKHR DGLYSKAAQL CVVSDAQIAI LATPSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018477225.1 | 3e-29 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Refseq | XP_018477620.1 | 7e-29 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Refseq | XP_018477643.1 | 8e-29 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Refseq | XP_018490867.1 | 6e-29 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Swissprot | Q9C633 | 6e-16 | AGL97_ARATH; Agamous-like MADS-box protein AGL97 | ||||
TrEMBL | A0A397YU64 | 9e-22 | A0A397YU64_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5YBQ9 | 1e-21 | A0A3P5YBQ9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DQD4 | 9e-22 | M4DQD4_BRARP; Uncharacterized protein | ||||
STRING | Bra018727.1-P | 2e-22 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM454 | 17 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49420.1 | 1e-19 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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