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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5602_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 272aa MW: 30440.3 Da PI: 8.7364 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.1 | 3.5e-19 | 127 | 181 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ +++ LAkklgLt rqV vWFqNrRa+ k RrC5602_p1 127 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 181 677889***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.9 | 1.5e-39 | 127 | 216 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr +l RrC5602_p1 127 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-AL 216 69*************************************************************************************9.54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 9.1E-27 | 2 | 95 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 108 | 181 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.94E-19 | 113 | 184 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 123 | 183 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-18 | 125 | 187 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-16 | 127 | 181 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.09E-16 | 127 | 184 | No hit | No description |
PRINTS | PR00031 | 7.0E-6 | 154 | 163 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 158 | 181 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.0E-6 | 163 | 179 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.6E-8 | 183 | 217 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.5E-23 | 183 | 226 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048467 | Biological Process | gynoecium development | ||||
GO:0080127 | Biological Process | fruit septum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MMMGKEDLGL SLSLGFAQNH HPLQLNLKPT SPPMSNHQMF PWNQTFVSST SDQQSLRKID 60 VNSLPSTVDL EEETGVSSPN STISSTVSGK RRSERQGSGD DLDIALDRSS SRGTSDEEEE 120 YGGDGCRKKL RLSKDQSAVL EDTFKEHNTL NPKQKLALAK KLGLTARQVE VWFQNRRART 180 KLKQTEVDCE YLKRCVEKLT EENRRLEKEA AELRALKLSP GLYGKMSPPT TLLMCPSCER 240 VGGPSNHSQR SVSLNPWLQM AHGSSFDVKH PR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 183 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00050 | PBM | Transfer from AT4G17460 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441252 | 1e-144 | AJ441252.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT1. | |||
GenBank | AK228587 | 1e-144 | AK228587.1 Arabidopsis thaliana mRNA for homeobox-leucine zipper protein HAT1, complete cds, clone: RAFL15-36-J21. | |||
GenBank | ATU09332 | 1e-144 | U09332.1 Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds. | |||
GenBank | BT005756 | 1e-144 | BT005756.1 Arabidopsis thaliana clone RAFL15-36-J21 (R50164) putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds. | |||
GenBank | BT006112 | 1e-144 | BT006112.1 Arabidopsis thaliana clone U50164 putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455167.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT1 | ||||
Swissprot | P46600 | 1e-176 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A078JMR3 | 0.0 | A0A078JMR3_BRANA; BnaAnng23540D protein | ||||
TrEMBL | A0A398AQ90 | 0.0 | A0A398AQ90_BRACM; Uncharacterized protein | ||||
STRING | Bo1g051520.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1563 | 26 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17460.1 | 1e-152 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |
Publications ? help Back to Top | |||
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