PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC559_p8

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 319aa MW: 34813.5 Da PI: 6.9679

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC559_p8	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.2	4.1e-14	159	209	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + e + +NRe+ArrsR+RK+a + eLe+ v +L eN+ L k l +++ RrC559_p8 159 EHEHLMLSNRESARRSRRRKQAHLSELETQVSQLRVENSNLMKGLTDVTQT 209 567889***********************************9988777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-12	155	219	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.6E-10	156	209	No hit	No description
PROSITE profile	PS50217	9.393	157	220	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-11	161	205	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-10	162	208	No hit	No description
Pfam	PF12498	5.2E-15	226	276	IPR020983	Basic leucine-zipper, C-terminal
Pfam	PF12498	5.6E-6	284	314	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEKGFSVEEE MSGNNNLLSE PAKESSGTNR SESEWAFHRF LQESSDPSAG VAATASVAGP 60 SSPVDDSHEY REILKSKLNL ACAAVVAMKR GGFIKPQDTS GRSENGGGAY TSDQGSLASP 120 KATPVMSSTI TSGSEFSGDD EEEADGETNM NPTNVKRHEH EHLMLSNRES ARRSRRRKQA 180 HLSELETQVS QLRVENSNLM KGLTDVTQTF NDASVENRVL KANLETLRAK VKMAEETVKR 240 ITGFNPMFHT MPQVSSVSNP SETSKSLDTS SQVTTPETPS SSSNKNKALI GCKMNRTESM 300 RRVASLEHLQ KRIRSVGDK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	178	RRSRRRKQ
2	173	178	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269\|PubMed:26263501, ECO:0000269\|PubMed:29348240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477740.1	0.0	PREDICTED: basic leucine zipper 63-like
Swissprot	B9DGI8	1e-143	BZP63_ARATH; Basic leucine zipper 63
TrEMBL	A0A397Z944	1e-174	A0A397Z944_BRACM; Uncharacterized protein
STRING	Bra010010.1-P	1e-174	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6846	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-127	bZIP family protein

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mair A, et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]