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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC5597_p1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
C3H |
| Protein Properties |
Length: 360aa MW: 39030.8 Da PI: 8.2818 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC5597_p1 | genome | MSU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 39.4 | 1e-12 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C +++rtG C yG+rC+F+H+p
RrC5597_p1 48 DEPDCIYYLRTGVCGYGSRCRFNHPP 73
6899********************97 PP
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| 2 | zf-CCCH | 39.2 | 1.1e-12 | 95 | 120 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C++f+rtGtCk+G++Ck++H++
RrC5597_p1 95 GQPVCQHFMRTGTCKFGASCKYHHPR 120
5789********************96 PP
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| 3 | zf-CCCH | 40.1 | 5.9e-13 | 145 | 169 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++++C++++rtG+Ck+G++C+F+H+
RrC5597_p1 145 GEKECSYYMRTGQCKFGSTCRFHHP 169
7899********************9 PP
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| 4 | zf-CCCH | 42.4 | 1.2e-13 | 278 | 303 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++++ C++f+rtG Ck+G++C+F+H+
RrC5597_p1 278 PGEPDCQYFMRTGDCKFGASCRFHHP 303
5789*********************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.371 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.5E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.3E-10 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.14E-6 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.5E-6 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.277 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.9E-10 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.31E-6 | 95 | 121 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.3E-6 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.657 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.5E-10 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.44E-6 | 146 | 171 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 149 | 168 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.788 | 277 | 305 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.7E-7 | 277 | 304 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.5E-11 | 279 | 303 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.15E-6 | 282 | 305 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.9E-5 | 283 | 303 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MMERYDRAGE ERSRADPPPP GTETGLEGSL WRLGLRGGGG ESFPERPDEP DCIYYLRTGV 60
CGYGSRCRFN HPPNRAPVLG GGLRTEPTEF PERMGQPVCQ HFMRTGTCKF GASCKYHHPR 120
QRGGDSVNNT PPVSLTYMGF PLRPGEKECS YYMRTGQCKF GSTCRFHHPL PPSAQPPPPQ 180
QLSTGSAVYP SLQSQSGVYL ARPQLLPGSY VQSPYGTYSQ MVLPPPGVVP YSGWNPYQVI 240
AMPSPGSQPS IGSSSVPLAS AYQSGPSSNK EQSFPQRPGE PDCQYFMRTG DCKFGASCRF 300
HHPLEAAPPK GVTLSSIGLP LRPKALFRLS TSMTGGVSQS EPPAETKTDD SASVEVETSS
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