PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5582_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 377aa    MW: 42384.1 Da    PI: 6.4187
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5582_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.4e-083243572154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  RrC5582_p1 324 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 357
                 469*****************************87 PP
2ELK292.4e-10278299122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  RrC5582_p1 278 ELKHELKQGYKEKIVDIREEIL 299
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-20112156IPR005540KNOX1
PfamPF037908.0E-18115155IPR005540KNOX1
SMARTSM012561.8E-28169224IPR005541KNOX2
PfamPF037911.5E-20174223IPR005541KNOX2
PROSITE profilePS512139.969278298IPR005539ELK domain
SMARTSM011886.1E-4278299IPR005539ELK domain
PfamPF037898.5E-7278299IPR005539ELK domain
PROSITE profilePS5007111.726298361IPR001356Homeobox domain
SuperFamilySSF466893.55E-16300364IPR009057Homeodomain-like
SMARTSM003892.4E-11300365IPR001356Homeobox domain
CDDcd000869.59E-12301362No hitNo description
Gene3DG3DSA:1.10.10.602.4E-25305362IPR009057Homeodomain-like
PfamPF059201.0E-17318357IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAFHHNHFNH FTDQQHQPPL PPPPQQQEQH FHESTPPNWL LRSDNNFLNL HTPASTVATS  60
SDSPSSAAAN QWLSRSSSFL QRGGGASNSN AGSGDAMENV TGGEESMIGE NARQKAEILS  120
HPLYEQLLSA HVACLRIATP VDQLPRIDAQ LAQSQNVVAK YSTLDAASQG LVSGDDKELD  180
HFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SFTGVSPGEG TGATMSEDED  240
EQVESDAHLF DGSLDGLGFG PLVPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR  300
KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH  360
SNPSSSTASK NKRKRYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12301365872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354374RKRNWHSNPSSSTASKNKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533380.0AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473363.10.0PREDICTED: homeobox protein knotted-1-like 4 isoform X2
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A0D3B0K30.0A0A0D3B0K3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AKQ10.0A0A3P6AKQ1_BRAOL; Uncharacterized protein
STRINGBo3g006870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]