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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
RrC554_p6 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
NAC |
| Protein Properties |
Length: 320aa MW: 36373 Da PI: 8.9821 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC554_p6 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 182.3 | 1.2e-56 | 17 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
lppGfrFhPtdeel+++yL++kv + +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lv
RrC554_p6 17 LPPGFRFHPTDEELITHYLHNKVLNIDFSS-KAIGEVDLNKAEPWELPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFR-GKSLV 114
79*************************999.88***************99999*****************************************.999** PP
NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
g+kktLvfy+grapkg+kt+Wvmheyrl
RrC554_p6 115 GMKKTLVFYRGRAPKGQKTNWVMHEYRL 142
**************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 320 aa
Download sequence Send
to blast |
METFGGFHKE DDEQMVLPPG FRFHPTDEEL ITHYLHNKVL NIDFSSKAIG EVDLNKAEPW 60
ELPYKAKMGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA TGKDKEIFRG KSLVGMKKTL 120
VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN MPKTAKNEWV ICRVFHKTAG GKKIPISTLI 180
QIGSYGGSSL PPLNDSSPYN NDKTKTEQSY VPCFSNQTET RGTLLNYFSN NPALCSIPLY 240
QPQSLHVSDP VLAQEQSVSQ AMFENNRRQS FKTLSVSQET GVSNTDISSS NIEFGRKGFD 300
HQEVPSSSTG PVDLEPFWSY
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 6e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 6e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 6e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 6e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 6e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 6e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 6e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 6e-57 | 14 | 173 | 17 | 174 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC966757 | 0.0 | KC966757.1 Brassica napus NAC transcription factor 79 (NAC79.1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Vidal EA,Álvarez JM,Gutiérrez RA
Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
Plant Signal Behav, 2014. 9(3): p. e28501
[PMID:24642706] - Lee MH,Jeon HS,Kim HG,Park OK
An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
New Phytol., 2017. 214(1): p. 343-360
[PMID:28032643]
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