PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5531_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 184aa    MW: 19771.5 Da    PI: 10.4707
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5531_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-184175135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+ Cgt kTplWR gp g+k+LCnaCG++ rkk++
  RrC5531_p1 41 CVDCGTNKTPLWRGGPAGPKSLCNACGIKSRKKRQ 75
                *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.0313571IPR000679Zinc finger, GATA-type
SMARTSM004019.4E-113586IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.7E-123675No hitNo description
Gene3DG3DSA:3.30.50.101.4E-143975IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.27E-114074No hitNo description
PROSITE patternPS0034404166IPR000679Zinc finger, GATA-type
PfamPF003202.4E-164175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSMTEETKTS KFESAAGDSS DVESGGNCSS SGSGGDTKKT CVDCGTNKTP LWRGGPAGPK  60
SLCNACGIKS RKKRQAALGI RQDDNKIKIK NKSNNNLATD HQTVKNGKGE AGNVKKRIKT  120
VDAADDSCSS SRVNKKSLER ASRFLDLGFK VPAMKRSVLE KKRLWRKLGE EERAAVLLMT  180
LSCG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470027.11e-130PREDICTED: GATA transcription factor 17-like
SwissprotQ9LIB51e-55GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A0D3A7R41e-80A0A0D3A7R4_BRAOL; Uncharacterized protein
TrEMBLA0A3N6UEQ31e-80A0A3N6UEQ3_BRACR; Uncharacterized protein
STRINGBostr.30275s0055.1.p1e-88(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138161624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16141.12e-68GATA family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]