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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | RrC5527_p1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family | NAC | ||||||||
| Protein Properties | Length: 474aa MW: 53776.7 Da PI: 5.9564 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 180 | 6e-56 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97
+ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+s ++
RrC5527_p1 6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTS-HS 102
79****************************.99***************6434555777**************************************.99 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129
++vg+kktLv+y+grap+g++tdWvmheyrle
RrC5527_p1 103 RTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
9*****************************85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 2.09E-64 | 4 | 156 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 61.025 | 6 | 156 | IPR003441 | NAC domain |
| Pfam | PF02365 | 1.4E-29 | 7 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 474 aa Download sequence Send to blast |
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK 60 DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS HSRTVGTKKT LVYYRGRAPH 120 GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKLEEKHHGM KKKKPTSTSE 180 QSTSSTCLYS DGMYENLENS GYPDSPDHGL TQLGNISSSD METVENKWSH YLSHDTSFNF 240 PAQSQFCSQY GTITYPPSQA EIAFECARLK NRMLPPAPPL HVEDLAHSEN LGTNVVNDTD 300 QMLSKIIELA QASHEPYNSL GSWEFASASG NFLGDVCYPR EKASSSGVGA NMKAVDMQVH 360 DGRLKEERIV ENLRWVGISS KELEKSFIEE HSTVVPIEDI WSYRRGSHEY QDGDGVNNNG 420 DVDDVYTLEF SENELNANNS DKTNNHDYDA TSSPRFEMVN KVEVSHGLFV TTRQ |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 4e-58 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-58 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-58 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-58 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-58 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 4e-58 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 4e-58 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 4e-58 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 4e-58 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 4e-58 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 4e-58 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 4e-58 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 4e-58 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 4e-58 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00212 | DAP | Transfer from AT1G65910 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CP002684 | 2e-73 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
| GenBank | F12P19 | 2e-73 | AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018468102.1 | 0.0 | PREDICTED: NAC domain-containing protein 86 | ||||
| TrEMBL | A0A0D3ANA6 | 0.0 | A0A0D3ANA6_BRAOL; Uncharacterized protein | ||||
| STRING | Bo2g052630.1 | 0.0 | (Brassica oleracea) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM10112 | 26 | 32 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G65910.1 | 0.0 | NAC domain containing protein 28 | ||||
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