PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

RrC546_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 322aa MW: 37135.6 Da PI: 10.0049

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC546_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.1	2.3e-25	193	241	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ledlskyF pi +A+++L+v+lTvLK++CR++GI+RWPhRk+ksl RrC546_p3 193 GLCLEDLSKYFGVPIVEASRKLNVGLTVLKKKCREFGIPRWPHRKLKSL 241 5779*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.656	176	261	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-21	194	241	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MAHSLTSLSI FQGANHKEMI RSLHVYGSVE IEREFLFQRK SRYVEKKAKP LFCSEGLRRP 60 EISLGSVFGT WRCIFVFRSN HSLPQFPTLL CPSRNPKLVD VPNLANVLKS ISELKPKKPS 120 NVSDIEQCSS RVPYCNVDQP KQQRFVLKQD LNCLPDSETE SEESEDDQTE HSESDVTTEI 180 LKKRRTPSQH VAGLCLEDLS KYFGVPIVEA SRKLNVGLTV LKKKCREFGI PRWPHRKLKS 240 LDSLIHDLQE EAEKQRENNK AAAMVVAKKQ KKLETEMRNI VERPFMEIQI ETKRFRQDNF 300 KKRHRASRAK KNQESLATSS ST

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	4e-73	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	4e-73	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	4e-73	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018468396.1	0.0	PREDICTED: protein RKD5 isoform X1
Swissprot	O81791	1e-171	RKD5_ARATH; Protein RKD5
TrEMBL	A0A0D3A1Q8	0.0	A0A0D3A1Q8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FQR5	0.0	A0A3P6FQR5_BRAOL; Uncharacterized protein (Fragment)
STRING	Bo1g006340.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-149	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]