PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 169aa MW: 19116.6 Da PI: 9.729

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5419_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.6e-14	86	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+Wk I++ + k Rt q+ s+ qky RrC5419_p2 86 PWTEEEHKLFLLGLQKVGKGDWKGISKNFVKSRTSTQVASHAQKY 130 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.331	79	135	IPR017930	Myb domain
SuperFamily	SSF46689	1.65E-17	81	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.5E-18	82	133	IPR006447	Myb domain, plants
SMART	SM00717	4.5E-10	83	133	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-11	85	130	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-11	86	130	IPR001005	SANT/Myb domain
CDD	cd00167	1.60E-9	86	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MADGSSSCTS ESTVDGSCIS REIMLFGVRV VLDPMRKSVS LNNLSEYEQT EEIPKIIAED 60 EKNKTYASAD EAVPITSSRE RKRGVPWTEE EHKLFLLGLQ KVGKGDWKGI SKNFVKSRTS 120 TQVASHAQKY FLRRSNLNRR RRRSSLFDMT TDTVNVSSDY KCLSLVGQR

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353076	1e-74	AK353076.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-O16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445545.1	8e-94	PREDICTED: transcription factor MYB1R1-like
Refseq	XP_018445564.1	8e-94	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	2e-53	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A078I5N4	6e-76	A0A078I5N4_BRANA; BnaA07g31770D protein
TrEMBL	A0A078JYA3	5e-76	A0A078JYA3_BRANA; BnaCnng78680D protein (Fragment)
TrEMBL	A0A0D3D0Q6	5e-76	A0A0D3D0Q6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GE64	5e-76	A0A3P6GE64_BRAOL; Uncharacterized protein
STRING	Bo6g119010.1	9e-77	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	3e-69	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]