PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 303aa MW: 34152.6 Da PI: 9.2283

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC5417_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33	1.4e-10	64	112	3	48
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 WT eE +++ +a + + +W++Ia+ ++ g+t ++++ r+ k+l RrC5417_p2 64 VWTVEENKRFEKALAFIDDKedveSWSKIAALIP-GKTVYDVIKRYKKLL 112 6***************99**********.**********986 PP
2	Myb_DNA-binding	49.6	8.9e-16	184	228	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky RrC5417_p2 184 PWTEEEHRRFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 228 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-5	58	113	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.01E-9	59	118	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-6	61	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-8	64	112	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.377	65	112	IPR017877	Myb-like domain
CDD	cd00167	1.86E-7	65	112	No hit	No description
PROSITE profile	PS51294	22.32	177	233	IPR017930	Myb domain
SuperFamily	SSF46689	2.0E-17	179	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-18	180	232	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.4E-13	181	228	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-13	181	231	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-13	184	228	IPR001005	SANT/Myb domain
CDD	cd00167	3.61E-11	184	229	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
ETPKQSIKKP LILFFSLTIV LCSSRFSFKK RRAHLAMSST NGGGFKCFSP ENTNWIFQEV 60 KDVVWTVEEN KRFEKALAFI DDKEDVESWS KIAALIPGKT VYDVIKRYKK LLDDVSDIEA 120 GLVPDPRYGY DASSETTCDY FFGLENSGCG YGYDYVVGGK RSTPAMTDGF GAPIPEKERK 180 KGVPWTEEEH RRFLMGLKKY GKGDWRNIAR NFVTTRTPTQ VASHAQKYFI RQLTDCKDKR 240 RSSIHDITTV NVPDANASTT TTPAAATVSP TPANPFDVFL PKPHHSFAFS PASSYHNAFP 300 QWS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018458248.1	0.0	PREDICTED: transcription factor DIVARICATA
Swissprot	Q8S9H7	1e-70	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	V4LJX8	1e-154	V4LJX8_EUTSA; Uncharacterized protein
STRING	XP_006398645.1	1e-154	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14884	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01200.1	1e-123	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]