PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5389_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 309aa    MW: 35727.8 Da    PI: 7.9669
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5389_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31152205255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  RrC5389_p2 152 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 205
                 9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.66E-15149206IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-28150206IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-23152206IPR006447Myb domain, plants
PfamPF002499.2E-7153204IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MELFPSQPDL YLKINRRREE QEEEDNKEQE EVQRRLLFGS KASDSDIKAS NHLIQALQFT  60
SDNKPTKIDH NQEHQESRDQ DLRSNLMVRP IRGIALRQNQ ILDHYYYSPT PFFFSEVNGQ  120
HANPNYSYNL HHRPHRQAQP QRLTAKRGVR APRMRWTTTL HAHFVHAVQL LGGHERATPK  180
SVLELMDVQD LTLAHVKSHL QMYRTIKSTE KPTTSSDIEQ SDTFEKELKV NSERQAKDLQ  240
GLWNNSSSES RFHLKAKASG LDITSNKNVD QRCPSYERLS SDSSSLTGTR PEIETPNLEF  300
TLAIPNLPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-16153207458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-16153207458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-16153207458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-16153207458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-16153207458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-16153207458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-16153207458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-16153207458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534550.0AK353455.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453976.10.0PREDICTED: probable transcription factor KAN3
SwissprotQ941I21e-154KAN3_ARATH; Probable transcription factor KAN3
TrEMBLA0A398AJX00.0A0A398AJX0_BRACM; Uncharacterized protein
STRINGBo1g017770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-151G2-like family protein